Cpom036648.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066370.1:9368277-9388317[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0076 0.63 11.9 0.8 1 23 308 330 308 330 0.96 2 23 1.2 1e+02 4.9 1.8 1 23 337 359 337 359 0.94 3 23 1.5 1.2e+02 4.7 4.9 1 23 363 385 363 385 0.96 4 23 4.3e-05 0.0035 18.9 2.6 1 23 390 413 390 413 0.96 5 23 0.0037 0.31 12.8 0.1 2 23 419 441 418 441 0.94 6 23 2 1.7e+02 4.2 0.1 1 21 452 472 452 477 0.91 7 23 0.026 2.1 10.2 0.2 3 23 483 504 482 504 0.94 8 23 0.00036 0.03 16.0 2.9 1 23 509 532 509 532 0.98 9 23 5.2 4.3e+02 2.9 0.3 1 11 552 562 552 568 0.86 10 23 5.2 4.3e+02 2.9 0.3 1 11 602 612 602 618 0.86 11 23 5.2 4.3e+02 2.9 0.3 1 11 652 662 652 668 0.86 12 23 5.2 4.3e+02 2.9 0.3 1 11 702 712 702 718 0.86 13 23 5.2 4.3e+02 2.9 0.3 1 11 752 762 752 768 0.86 14 23 5.2 4.3e+02 2.9 0.3 1 11 802 812 802 818 0.86 15 23 5.2 4.3e+02 2.9 0.3 1 11 852 862 852 868 0.86 16 23 5.2 4.3e+02 2.9 0.3 1 11 902 912 902 918 0.86 17 23 5.2 4.3e+02 2.9 0.3 1 11 952 962 952 968 0.86 18 23 5.2 4.3e+02 2.9 0.3 1 11 1002 1012 1002 1018 0.86 19 23 5.2 4.3e+02 2.9 0.3 1 11 1052 1062 1052 1068 0.86 20 23 0.00044 0.037 15.7 0.3 1 23 1102 1124 1102 1124 0.97 21 23 0.00043 0.036 15.8 1.6 1 23 1132 1154 1132 1154 0.98 22 23 1.9e-05 0.0016 20.0 1.0 1 23 1160 1183 1160 1183 0.96 23 23 0.00052 0.044 15.5 0.2 2 23 1191 1213 1190 1213 0.93
Sequence Information
- Coding Sequence
- ATGAATGTGCATAATGTTGCCTCAAATGAGGATTCCTTGCTGGCCTGTAGAGCATGTCTGGTTACCGATTGTAAATTGTACAATATTCACGATTATCAACTCGGTGGTGCCTTTGCTCGCATCTCAGGTGTTcctGTGCACAAAGATGGGCTGCCGCAGCACCTCTGCATCTTCTGCAGTGCGCAGGTGGCACGTTTTGAAGCCTTTCGTGAAAAGGTGCTCCGCTCACACTTTTGTATGAGGGCGAAACTATGCGAGAGAGAGTTGGATACAAACACTATCCGCACCATCGACCGCACTCACTTCAAGCTCCTTAACAACCTAGCTTTCACAAAAGCACAGACCGTCGAGTGCGTAAACCTAAAAACCTCAGAAGACATCAAAAACGAACCCAACGCAGACATCGACGACACTAAAGATAATATCGTCGAGAAAACTGAtctgaaagaagaagaaaacaaaatcgATGACATAGAACTTGATAATGATGACGGAGTTGAAGACATATTCATCCTCACAGACGTCGAAGATattagaaaaagaaagaaaagagtATCTGCTAAGAAAACAATGAAACTTGAAAAATTTGATGATGAGGATGACGTCAAACTTGTAAATTTTGCTAAAAAAAGACCGAATAGGAAAAAGGAGAGTAATCAAAAGAAGAATGTTGTTAAAAAGAaagaattaaaaactaaaaatactgACCATAAAGATTTAAAACCAAAAGTAAAGAAGGAAAGGAAGCCAAAGGAGGATAGTAAAAGGAAGTTTCGGAATCCGGAAAATGGTTACATGCCGGTGTTTGACTTTGCTACGTTTGAGAATGCTTTTGAAGTGCGTGTTGTTACTTTGAGCAAGGAAGACCAACTGGAGGAGATCGCGACGCGCAAAGAGTCCGCCAACTACCTGGAGTCCCCGTTCCAGTGCCACGACTGCGGGAAAGGGTTCCTGGCCGAGGAGGCTTATAACAACCACCAGCTGCGGCACAGCCCGAGTGCGGGCCCATATGCCTGCGAAATCTGCAACGTTCGCTTCAACATGCAATGCCGTCGTCAGGAGCACCAAGACATGCATCGGCTCAAGTTCTTCTGCAAGAACTGCAGCTTCGTCTCCAGAAACAGGCATCAAGCGAGGAGACATTACGATATGCACGCGGGCAAAACCTTCGAGTGCAAACATTGTGGGAAGATGTTCAATAAGAGTTCAACGTATTTGTCGCACGTGCGTCTGGCGCATCCAGACATGCACGTGTCGTGCGACCTGTGTGGCGAGACGTTTGTCGGGCAAGCGGGGCTGAAACAGCACAAGGCCAAGATGCACTCCATAGCCGAGaacATAAAACCGCAGAAATTCGAGTGTGGCACCTGTTCAGCCACCTTCCTGAGCGTAGAGGCGCTGAACAGACACACGGACACGGCCGCCGAGCACGGCGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGACGCGCTACGGGAACATGTCAAAGAGACGCATCCGAAGGAGACGTATCGGTGTGAGGAGtgcAACATGTCATTCAAACGCGCGTCGGCCTACGACCTGCACCATCGCCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGTAACATCGACATGTACCTACACACGACCTGCACACCGCTGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGtCCCGCCAAGGGCTACGCTACCACCTGCGGGACCACAAGGGCCTCAACCTGAAGCTGTTCACGTGCCCCGAGTGCAACAAGACTTTCGCCGCGAAGCATATGAGAGAttGGCACATGAGGTCACACACGGGCGAGAAGCCGTACCAGTGCCCCGAGTGCCCGCTCGCCTTCAGCCTCAATAGCAACTTCAAACGGCACCACAAGGCGGTACACCTCGGGCAGCGTAAAAGCATCCCGTGCAACATCTGCGGGCGCGTGTTCACGACGACGTCGTGCGTGCGCGTGCACGTCAACGCCGTGCACCGCGGCATGCCGTGGCCCAAGCGCAACCGCGCGCGCGCCAAGCACGACCAAAAGTCGCCGCTACAcaacaaataa
- Protein Sequence
- MNVHNVASNEDSLLACRACLVTDCKLYNIHDYQLGGAFARISGVPVHKDGLPQHLCIFCSAQVARFEAFREKVLRSHFCMRAKLCERELDTNTIRTIDRTHFKLLNNLAFTKAQTVECVNLKTSEDIKNEPNADIDDTKDNIVEKTDLKEEENKIDDIELDNDDGVEDIFILTDVEDIRKRKKRVSAKKTMKLEKFDDEDDVKLVNFAKKRPNRKKESNQKKNVVKKKELKTKNTDHKDLKPKVKKERKPKEDSKRKFRNPENGYMPVFDFATFENAFEVRVVTLSKEDQLEEIATRKESANYLESPFQCHDCGKGFLAEEAYNNHQLRHSPSAGPYACEICNVRFNMQCRRQEHQDMHRLKFFCKNCSFVSRNRHQARRHYDMHAGKTFECKHCGKMFNKSSTYLSHVRLAHPDMHVSCDLCGETFVGQAGLKQHKAKMHSIAENIKPQKFECGTCSATFLSVEALNRHTDTAAEHGDLRPCEQCGENCASEDALREHVKETHPKETYRCEECNMSFKRASAYDLHHRRKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCVTSTCTYTRPAHRCKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTSRQGLRYHLRDHKGLNLKLFTCPECNKTFAAKHMRDWHMRSHTGEKPYQCPECPLAFSLNSNFKRHHKAVHLGQRKSIPCNICGRVFTTTSCVRVHVNAVHRGMPWPKRNRARAKHDQKSPLHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -