Cpom016433.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- ken
- Assembly
- GCA_033807575.1
- Location
- CM066352.1:22564699-22580588[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.49 41 6.1 2.0 2 19 495 512 494 518 0.94 2 11 0.0046 0.38 12.5 2.0 1 23 532 555 532 555 0.97 3 11 0.077 6.4 8.7 2.9 1 23 560 584 560 584 0.91 4 11 0.001 0.085 14.6 0.1 2 22 636 656 635 656 0.96 5 11 1.6e-05 0.0013 20.3 1.4 1 23 716 737 716 737 0.98 6 11 7.4e-06 0.00062 21.3 0.4 1 23 743 766 743 766 0.96 7 11 4.5 3.8e+02 3.1 1.7 2 19 779 796 778 799 0.90 8 11 0.013 1.1 11.1 0.1 3 23 806 828 805 828 0.95 9 11 0.032 2.7 9.9 3.9 2 20 836 854 835 857 0.93 10 11 0.0013 0.1 14.3 2.7 1 22 863 884 863 887 0.90 11 11 7.8 6.5e+02 2.4 0.0 1 23 893 918 893 918 0.89
Sequence Information
- Coding Sequence
- ATGCTGTCACTACGAGATGATGACGATGACGATAATCACCTTTGCATCAGATGCAACACCACCATCATCGGTCTCGACAACTACGTCAAGCACAGAAAAGAACGATGCACTAAATGCAAGCCTCAACCGAAAGTTGAAATACCCATCGATCCCTTAGAACCCACATATAACCTTGGAGCAGATGTATTCTTCCAATCCCTAGAACTCCAAAGCAGTGTCAAAAAGACTTCGCTATCACGACTGACTCCGCCGATACCGATTACTAAAGCCAGCTTAGATAGAAAGAATGTTCTTGTAGTTGCATCTACTTCTAGTGATATACGGACCATGAGTCCAATAGAAAGTAATTTTAGAGGTGGAGATTGGATTGGTGGACATAGTTTAAGAATAGGCAGCAATGAGGATAACCAGACTAAACTGATAAATGCCGTTGCCAGTATTAGTGGTGCTGTAAAGAAGGAAATACCAACATCATCATACAGTATTGGGCCTTTTATTGATTTCAAACCTGATGATGAATCTGATGAGTCTGAAGATTCTGAAGATGAAGATGAAGAGGAACCACCATCAGGTGGGAAGTGGAAACCTCCTCCAAATTATACTGGAGGTAAATGGAGACCAGCGTCTCCGGAGCATGAGGAATGGGGGATCAGAGATGAGCAGGAACATACAGGAGGAAAATGGAGACCAATTATGGCTGATGCTAATGATAGAGATGAAGATTATGACGCTCCACCACCAGGACATACTAAAGGGAAATGGGTACCAGGAGCCCATGAGAAATCGCAGATCATGCAAACGACTATACAGATGAAAGGATCAGTTCAATATTGGTGTGGTCCGTGTAATAGAAGATTAGGTTCAAGACCGATTTATGAGAAGCATTTATTGTCTAAATTACACATGAAGAAGGTGCTGCCTGAGAATGAGTTAGAGTTTTCGGGACATCTGCAACCGTTAAGAAGTACTGCCGAACAAAGCAGTCGCAAATTGAGATCGGTTAGCAAACCTGAACCATCGCAAAAAAGTATACTAAGAACGGaacttgaaaagaaaaaaaagagaaaacgtaaATTACGCTTCGTCAACTGTCCCGGCTGCAATTCAAGGGTTCGGCAGCATTTGATGGGAAAGCATTTAATATCCCATTACCATTTTCGAAAAGCTTCAACAGTACAAAACCAGGTCTATCGTCAACTGATCCTAAATAATATTGACGTCATTGTTCACCAATCTCCTTTTCAATGCAGCCCCTGCAAGTTCTACACGAATTGGCTATCAAATTTCATGCAGCATTGGTCTTCAGAAGAACATAGCCAAACAACATCATCCATGGATGGTCGACATTGGTGCTCTTTTTGCAAATTCGAATGTGAAACGTCAATGGATATGCTGCTACATCTATCTAGCACTGATCATAGTGAAGTGGTTGCGGTTATTAACAGATCCATGCCAATAATTATTAGAAAGAAGAGTATTCTTAAATGCGAAACCTGTTTCAGAGAGTTTCGCTACAATGCTGAGATTAGACGGCATTGTCAATTGACAGGCCATCAAATGACGTATACAGCTACAGATGAATATCAAGAGCTGCACAAGTGCCAGCAATGTACAGTGAAGTTTAAATCTTCCTTAACCCTGGCTGCTCATTTGAAGTCTGTTCACAAGCAGAAAACACACATGTGCTTGGTATGTTCTCGAACCTTCTGTTCAGCAGAAGAAGCTAAGCAACACAGAAATACTTCAGAGCATAGACTGAGAAGGAAGGCGAATATGAAAGCACGTGGATTTCCTGTAAAAGAAGTGAGCAAGAAATGCCCGTATTGCATTGAGAAGAAAGTTGTTTTAGCTAATGTTCTGGAGCTGAAAGACCATATTAGGAGGATGCATCCTAATaacaaaaacaaATGTCCAAAATGCGGCATGTCCTTCATCCTGCCCCAGGAAGTGACCCGCCACATCCGCTCCAACGCCTGCCAGTTCCGCAACTGGCTACCCCCTACTTCCAACCACCAGCTTTGGAACTGTAGCCAATGTCTGTTTACTACGGACTCCCAGGCTGAATGCTTCTTTCATGAGGTTTTACATACGATTCCAGTCAAGGAAATCCAGAGAGTTGATGACCAAGAAAAAATCATTCTCAAATACAGATGCCCGTTATGCCCCAAGAACTTCCGCAAATCCTCCCTCCGTGACCACCTCCGACAGCACACTTGCGAACGTCCCTTCATCTGCAAGATCTGCGGCGCCAACTTCACCAGAAAAAGCAGTCTTGTCAACCATGTCCAAAAAGAGCATCAGACGCCAAAAGTGATGCGGGTGAATGAAGAAAAGCAATGCGGAAGGTGTAAGAAGAAGTTTCCAATCGAACAAGAACTCTCTTCACATTCCTGTCAAGCAGCGACCGAGCTTCTGTGCCCCTACGAGCAATGCGGTTACGTCGCTTCAACACCTAAACAATATACTAAACATTACGCCACTCACGGCGTACGACTAAAACACCTGAGCTGTCCCAGATGCCCTTTCAGAACCAACCAGAATAGTCATCTGAAGAGACACCTCATCTGCCACGAAGCTCGCAAGCCATACAAATGTCCACATTGCGAGTTCACCTGCGCAAGTTTAGAGAACCTCCGTAAGCATGCGCTTCGCCGCGCTCACCGCGGCTTACCATTATACATATGCGCCGCCGCCGACTGCACCTTCGGCGCCGACACCGCTACGGAGCTGCGCGCGCACCTCGTCATCGCACATGGGGATCTTTATGACGTCCGCTCCGCTGTTGAAGCCGTTAAAAGGCATCTGATGGTAGAATGA
- Protein Sequence
- MLSLRDDDDDDNHLCIRCNTTIIGLDNYVKHRKERCTKCKPQPKVEIPIDPLEPTYNLGADVFFQSLELQSSVKKTSLSRLTPPIPITKASLDRKNVLVVASTSSDIRTMSPIESNFRGGDWIGGHSLRIGSNEDNQTKLINAVASISGAVKKEIPTSSYSIGPFIDFKPDDESDESEDSEDEDEEEPPSGGKWKPPPNYTGGKWRPASPEHEEWGIRDEQEHTGGKWRPIMADANDRDEDYDAPPPGHTKGKWVPGAHEKSQIMQTTIQMKGSVQYWCGPCNRRLGSRPIYEKHLLSKLHMKKVLPENELEFSGHLQPLRSTAEQSSRKLRSVSKPEPSQKSILRTELEKKKKRKRKLRFVNCPGCNSRVRQHLMGKHLISHYHFRKASTVQNQVYRQLILNNIDVIVHQSPFQCSPCKFYTNWLSNFMQHWSSEEHSQTTSSMDGRHWCSFCKFECETSMDMLLHLSSTDHSEVVAVINRSMPIIIRKKSILKCETCFREFRYNAEIRRHCQLTGHQMTYTATDEYQELHKCQQCTVKFKSSLTLAAHLKSVHKQKTHMCLVCSRTFCSAEEAKQHRNTSEHRLRRKANMKARGFPVKEVSKKCPYCIEKKVVLANVLELKDHIRRMHPNNKNKCPKCGMSFILPQEVTRHIRSNACQFRNWLPPTSNHQLWNCSQCLFTTDSQAECFFHEVLHTIPVKEIQRVDDQEKIILKYRCPLCPKNFRKSSLRDHLRQHTCERPFICKICGANFTRKSSLVNHVQKEHQTPKVMRVNEEKQCGRCKKKFPIEQELSSHSCQAATELLCPYEQCGYVASTPKQYTKHYATHGVRLKHLSCPRCPFRTNQNSHLKRHLICHEARKPYKCPHCEFTCASLENLRKHALRRAHRGLPLYICAAADCTFGADTATELRAHLVIAHGDLYDVRSAVEAVKRHLMVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00656672;
- 90% Identity
- iTF_00413062; iTF_00409782; iTF_00410879;
- 80% Identity
- -