Cpom040065.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- ZEB2
- Assembly
- GCA_033807575.1
- Location
- JAPFFR010000202.1:55383-75646[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 16 7.5 4.5 2 23 376 398 375 398 0.91 2 13 0.018 1.5 10.7 2.1 2 21 405 424 404 426 0.93 3 13 0.03 2.5 10.0 2.8 2 21 448 467 447 469 0.93 4 13 0.03 2.5 10.0 2.8 2 21 475 494 474 496 0.93 5 13 0.018 1.5 10.7 3.2 2 21 502 521 501 523 0.93 6 13 0.03 2.5 10.0 2.8 2 21 529 548 528 550 0.93 7 13 0.03 2.5 10.0 2.8 2 21 556 575 555 577 0.93 8 13 0.03 2.5 10.0 2.8 2 21 583 602 582 604 0.93 9 13 0.054 4.5 9.2 0.2 3 23 617 639 617 639 0.92 10 13 0.00079 0.066 14.9 1.4 1 23 647 670 647 670 0.92 11 13 0.0046 0.39 12.5 0.7 1 23 676 699 676 699 0.96 12 13 1.2e-05 0.001 20.6 1.2 1 23 709 731 709 731 0.97 13 13 3.7 3.1e+02 3.4 0.3 2 23 738 762 737 762 0.84
Sequence Information
- Coding Sequence
- ATGAAGCATATTTGTGTAATTTGCACACTCCGGAAACCGCCGCTGACGCCGCTGGCCACGGAGCATAGGGAATTACTCGAGGCTATTGTATCTCCAGCTATTACCATGGCAGACCTCAGCGCTTGTGAAATCTTGCTGTGTATGGATTGCCAGGAGAAGCTGCAGTCCATACAGCAGTTCCAGAAGATGGCGCTGAACGGCCTCACAGTACTCAAGTCTGTGCTTTCTAAAGTGAACAATGCACCCACGGTACAGGATCAGAAAATACAAACACTAATAGAAATGAAAGATGGCCGGAAACTACTTGTGAATCCAATATCTGTTGTGGAAACAATTATAACCGAACCAGAACTGGAAGAACCAGCCAGCTTAGAACTTTCTGCGACTTCACCCGGACACCCACACCCCCTTGCAGAGGAGATGGATATTAAATCGGAGCAACCTGCGTTCCCAGAGCAGCCCTGCTTAGACGTTGAATTGAAGCTCGAAGTACAATCCAAACATGAGACTGGAACTGAATTCGAACCTGAAATAGAGTTAAAATCGGAGCACTATGAATTTGACTCTGAGTCTGAATTTGATAATGCTTCTTTGAGTCGCTCTGTGGCTCAGTGTGACTCAGACTCGAAGATGAAAACAGAGGAATGTGATTTCACCAGAGTACAGAACATTGCGTTTCATACACGAATTATGAGCCCCTTGCAAACGAATCACGTTTATAAGacGATTGAAAACAAATATAAGCCTGCAATTTTAAAACAAGCACACAGACCACCAAAGGAACCTAGAGCAGCAAAAGTGGGTATAATAGCTAGAGCATACGCTGCCAAACAAGCTAAAGCAGCTTTAAAAGCTAGCGCAAACGCAGCTAAACAGGTTAACGTAGCTTCAGAAGGAGCACATGGAATTATAGAAGCAAATGTAGCTTCAGAAGAAGCACAAACAGTTGAAGAAGTAAACATAGCTTCAGTAGCTAGTGATAATGCATTTATAGAAATGACTGTCGCTTGTACAACTGAAATGGCAAACGAAGCTGAGAAAGCGAACGCTACAAATATTACTACAGAAGCAAACGCAGCAGTTGAAAAGGAAAAGGAAAGAGAGAGTAAGAAGTCGGAGCGCGTGCAGTGCGCACTCTGTGACAAAGTCCTGTGCCACAAGCGGAGTTTTCGGCAACATTACTATCTACGGCACGCCGAGGCAAACCCAGTCAAGTGCGAGTTGTGCCACAAACAGTTCCGCAACGCAGGTGTGCTCCGCTACCACCAGTGTCCGCACAAAAAGTTCCGCAATGCAGGTGTGCTCCGCTACCACCAGTGTCCGCACAAAAAGGTAACAGTCAAGTGCGAGTTGTGCCACAAACAGTTCCGCAACGCAGGTGTGCTCCGCTACCACCAGTGTCCGCACAAAAAGGTAACAGTCAAGTGCGAGTTGTGCCACAAACAGTTCCGCAACGCAGGTGTGCTCCGCTACCACCAGTGTCCGCACAAAAAGGTAACAGTCAAGTGCGAGTTGTGCCACAAAAAGTTCCGCAACGCAGGTGTGCTCCGCTACCACCAGTGTCCGCACAAAAAGGTAACAGTCAAGTGCGAGTTGTGCCACAAACAGTTCCGCAATGCAGGCGTGCTCCGCTACCACCAGTGTCCGCACAAAAAGGTAACAGTCAAGTGCGAGTTGTGCCACAAACAGTTCCGCAATGCAGGTGTGCTCCGCTACCACCAGTGTCCGCACAAAAAGGTAACAGTCAAGTGCGAGTTGTGCCACAAACAGTTCCGCAATGCAGGTGTGCTCCGCTACCACCAGTGTCCGCACAAAAAGgcCGCCCCGAGGCCGGCGCCGCGGACGTGGTGCGCGGAGTGCGCGCGGCAGTTCCCGACCCGCGCGCAGTACCGCGCGCACCTCCTCACCCTCAAGCACACGCCGCGGGCCCTCTACAAATTCGAGTGTGAAGTGTGCAAGAAGCGGTTCCGGCACCGGCGCTGGATGCGCGACCACCTCGACGCCGCGCACCGCGGCCTGAAAAAGTACTCGTGCGACAGATGCGACTCTTCGTTCGGCTCGTTCACGTCCCTGCGGCGCCACGTCGCGCGCGACCACGACAAGGTAGTCGCGCCGCGGGCAACGCACGTGTGCGACCTCTGCGGGAAGACGTTCAAGGTTAAAAAGTCGCTGGAGGAGCACCTGTTGTCGCACTACGGGTTGCGGCCCTTCACGTGCGCGGCGCCGGCGTGCGCGGCCGCCTTCTGCTACCGCGCCGCGCTCTACACGCACACGCGCCTCAAGCACGCGCCCGACAAGAAGGGACGGAAGGATCAGGAACATGACGAACAAATGGATGACGAGGAAAGGCCTGAATACTTGGAATTACAATTCGATGACTGA
- Protein Sequence
- MKHICVICTLRKPPLTPLATEHRELLEAIVSPAITMADLSACEILLCMDCQEKLQSIQQFQKMALNGLTVLKSVLSKVNNAPTVQDQKIQTLIEMKDGRKLLVNPISVVETIITEPELEEPASLELSATSPGHPHPLAEEMDIKSEQPAFPEQPCLDVELKLEVQSKHETGTEFEPEIELKSEHYEFDSESEFDNASLSRSVAQCDSDSKMKTEECDFTRVQNIAFHTRIMSPLQTNHVYKTIENKYKPAILKQAHRPPKEPRAAKVGIIARAYAAKQAKAALKASANAAKQVNVASEGAHGIIEANVASEEAQTVEEVNIASVASDNAFIEMTVACTTEMANEAEKANATNITTEANAAVEKEKERESKKSERVQCALCDKVLCHKRSFRQHYYLRHAEANPVKCELCHKQFRNAGVLRYHQCPHKKFRNAGVLRYHQCPHKKVTVKCELCHKQFRNAGVLRYHQCPHKKVTVKCELCHKQFRNAGVLRYHQCPHKKVTVKCELCHKKFRNAGVLRYHQCPHKKVTVKCELCHKQFRNAGVLRYHQCPHKKVTVKCELCHKQFRNAGVLRYHQCPHKKVTVKCELCHKQFRNAGVLRYHQCPHKKAAPRPAPRTWCAECARQFPTRAQYRAHLLTLKHTPRALYKFECEVCKKRFRHRRWMRDHLDAAHRGLKKYSCDRCDSSFGSFTSLRRHVARDHDKVVAPRATHVCDLCGKTFKVKKSLEEHLLSHYGLRPFTCAAPACAAAFCYRAALYTHTRLKHAPDKKGRKDQEHDEQMDDEERPEYLELQFDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -