Cpom036561.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066370.1:8604275-8620689[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0036 0.3 12.9 1.5 1 23 288 310 288 310 0.99 2 17 1.4 1.1e+02 4.8 2.4 1 23 317 340 317 340 0.95 3 17 0.029 2.4 10.0 3.8 1 23 371 394 371 394 0.98 4 17 0.00022 0.018 16.7 0.7 2 23 403 425 403 425 0.95 5 17 0.35 29 6.6 0.7 2 20 434 452 433 454 0.92 6 17 0.08 6.7 8.6 0.3 3 23 467 488 466 488 0.89 7 17 2.6e-05 0.0022 19.6 0.6 1 23 493 516 493 516 0.97 8 17 3.6 3e+02 3.4 0.1 2 11 543 552 542 556 0.82 9 17 3.6 3e+02 3.4 0.1 2 11 627 636 626 640 0.82 10 17 3.6 3e+02 3.4 0.1 2 11 795 804 794 808 0.82 11 17 3.6 3e+02 3.4 0.1 2 11 879 888 878 892 0.82 12 17 3.6 3e+02 3.4 0.1 2 11 963 972 962 976 0.82 13 17 0.99 83 5.2 4.5 2 23 1047 1068 1046 1068 0.97 14 17 0.00036 0.03 16.0 0.3 1 23 1074 1096 1074 1096 0.96 15 17 0.0014 0.12 14.2 0.6 2 23 1103 1124 1102 1124 0.97 16 17 0.00043 0.036 15.8 2.4 1 23 1130 1153 1130 1153 0.96 17 17 0.0011 0.094 14.4 1.4 1 23 1193 1216 1193 1216 0.96
Sequence Information
- Coding Sequence
- ATGGACACAGTGAAAGTGGAGGAACAGTCCGAGTTGTTGGCTTGTCGGATTTGTCTGGCTTCAGACGTGATATTGTATCACATTCGCGAGTCGGGCTTAGAACAAATGTTTTCGGAAATCATGGGAACTTCGCTGTCAGCATGGGACGGGCTCCCACAACACCTGTGCGCGTGGTGCCGCGCGCAGTTCGCGCGGGCGCAAGCGCTGCGCGTGCGCTTCCACCGCGCCGACGCGCTGCTCAAGCAGGCACTCGTACACCAGCATATTaTAACAAACGAATTTATACGCACAATCAACCGCTCAATGCACAACCTCACGCACACTCTCTCAACCCAAATGTTTAACGAAGACACTACTTATTACTTTAACTACGAGGCACAAGTggatttatacaatacaattctCATAAATAACAATGGACAAATGAATGCCGATGTCGAAAATGATGACGTGAATAATGATGTCGAAAATGATGATAGACCAAATAATTCCGGTTCGGAGATAGACGTAGACAAATTTGAACTTGTGCATGACATCAAAGTTAAATTAAAGGATAATATTAGTAACATAGATGCAAATCTAAATTTACCTGAAGAAGAAATAGTAGAATATTCAGATTCACAGTTTAAAAAGGTAAAAGCAAAGAAAAAGAGACTGTCAAGAAAAAGACGAAAAATTAAAGAGCAAGAAGCAGACAaaggaagaaaaagaaaagaacgGTCAAAGCAAAAATTTTGTACTGAAGAAGATTTCAAAGAATTTGAAAAGAAATACGATTTCCAAGTGCAGTGTTTGACAGAAAAAGAAATGGAGAAGGAGATGGAGAAAAGAAAAGAATCTGACAAGTATCTTAAAGGAGAGTACAAGTGTGAGTTGTGTTATAAAGGCTTCCTGACGTCTGTCACGTACGAGAACCACATGAAGACTCATGATCCGGCGCGTGGCGAGCACGTGTGCGGGCTGTGCCACGTGCGCTACCAGTTCCCCGTGAAGCTGCGCCAGCATGTACAGAATACCCACCGGCTTAAGTTTCGATGCGCGAGGTGCAACGAACTCGTGCGCGGCAAGGCGTGCGCCGTGCTACACGCCGCATACCACGCAGGCACCACCTTCCAGTGCGCGCATTGCGACAAACAGTTCCTCAAGAAGACATCGCGTACTTCACACATGCGCATGGCGCATCCGGCGGAGAACGCGGCCGGCGGCACCTGCGAGGTGTGCGGGGAGACCTTCACGAGCCGGACGGGGCTCAAGGCCCACAAGACCCGCAGCCACAAGAAGgTTAATTTGCCTGAACTAAGATGCCGGAGGTGCAGGACACAGTTCGAAAACATGGACGCTCTGAAGAGGCATAAAGACACGTACGCAAACAACAAGTGTGATTCCAACTTGagTGCGTGCTCGCAGTGCGGCGAGAGCTGCGCGAGCGCCGACGCTCTGATCCTGCACGCGCACGCGCAGCACGGTGTGCAACTGTACACCTGCGACACTTGCACGAAATCCTTCACATCAAAGCCGTCGCTCGCCACGCACATCGACCGCGTGCACCGCCTGCTGCGGCCGCCCAAGGCCGACTACAGCGACGGCGGCCGCCGCTCGCAGCCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGGCTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCAGGAAGCGACTGTCCGTGAGTCTGTAGCTCTATTGTCAGGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGGCTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGGCTGTCCGTGAGTCTGTAGCTCTATTGTCAGGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGGCTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCAGGAAGCGACTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGGCTGTCCGTGAGTCTGTAGCTCTATTGTCAGGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCGCTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGGCTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGTGAGTCTGTAGCTCTATTGTCAGGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCGCTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGGCTGTCCGTGAGTCTGTAGCTCTATTGTCAGGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGTGAGTCTGTAGCTCTATTGTCAGGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTGTCCGAGGCCGACTACAGCGACGGCGGCCGACTGGCTGCACTGGGCCTCCGTGTGCGAGCACTGCAGGAAGCGACTGTCCTGCCTGGCGACTCTGAAGATACACATGAACAAACACACGGGCGAGAGGCCGTACAAGTGCTCGCTGTGCCCCAAGGCCTACATGACGCCCTACGGACTTAACAACCACCAGGCGTTCCACACGGGGGTGAGGAAGTGGCAGTGTCCAGAGTGTCCCGCTACCTTCATGCACCAGTCCTCCGTCTACCAGCACAGGAAGATACACACAGGCGAACGCTCCCACCAGTGCACGATCTGCGAGAAATACTTCACGCAGTCCGGCTCGCTCTACACTCACGTCAAATACGTGCACATGAAGGAAACTCCGCCTCCGCGCAAGCGGAACAGGAAGCCTGTCCAACAAAATACTTCACACAGCCCGGCCTGTCCAACAGTAGAGCCTTTACAGATACACACAGGCGAGCGCTCCCACCAGTGCACGATCTGCGAGAAATACGTCTCGCAGTCCGACTCGCTCAACACTCACGTCAAATACGTGCACATGAAGGAAACTCCGCCCCCGCGCAAGCGGAATAAGAAGCCTGTCCACAGTAGGGCCTTTGGGTTTTTAGAAATACTTCACACAGCCCGGCCTGTCCAACGTTATACGATCTGCGAGAATTACTTCTCGCAGTCCGGCTCGCCCAACACTCACGTCAAATACGTGCACATGAAGGAAAAAGCCTGTCCAACAGTAGGGCCCTTTACAGATAAACACAGACGAGCGGCCCCACCGGTGCGCAATCTGCGAGAAATACTTCACGCAGTCTGGCTCACGTCAAATACGTGCAAAATCATCTTATAA
- Protein Sequence
- MDTVKVEEQSELLACRICLASDVILYHIRESGLEQMFSEIMGTSLSAWDGLPQHLCAWCRAQFARAQALRVRFHRADALLKQALVHQHIITNEFIRTINRSMHNLTHTLSTQMFNEDTTYYFNYEAQVDLYNTILINNNGQMNADVENDDVNNDVENDDRPNNSGSEIDVDKFELVHDIKVKLKDNISNIDANLNLPEEEIVEYSDSQFKKVKAKKKRLSRKRRKIKEQEADKGRKRKERSKQKFCTEEDFKEFEKKYDFQVQCLTEKEMEKEMEKRKESDKYLKGEYKCELCYKGFLTSVTYENHMKTHDPARGEHVCGLCHVRYQFPVKLRQHVQNTHRLKFRCARCNELVRGKACAVLHAAYHAGTTFQCAHCDKQFLKKTSRTSHMRMAHPAENAAGGTCEVCGETFTSRTGLKAHKTRSHKKVNLPELRCRRCRTQFENMDALKRHKDTYANNKCDSNLSACSQCGESCASADALILHAHAQHGVQLYTCDTCTKSFTSKPSLATHIDRVHRLLRPPKADYSDGGRRSQPDWLHWASVCEHCGKRLSEADYSDGGRLAALGLRVRALQEATVRESVALLSGGRLQRRRPTGCTGPPCASTAGSDCPRPTTATAADWLHWASVCEHCGKRLSEADYSDGGRLAALGLRVRALREAAVRESVALLSGGRLQRRRPTGCTGPPCASTAGSGCPRPTTATAADWLHWASVCEHCRKRLSEADYSDGGRLAALGLRVRALREAAVRESVALLSGGRLQRRRPTGCAGPPCASTAGSGCPRPTTATAADWLHWASVCEHCGKRLSEADYSDGGRLAALGLRVRALREATVRESVALLSGGRLQRRRPTGCTGPPCASTAGSDCPRPTTATAADWLHWASVCEHCGKRLSEADYSDGGRLAALGLRVRALREAAVRESVALLSGGRLQRRRPTGCTGPPCASTAGSDCPRPTTATAADWLHWASVCEHCGKRLSEADYSDGGRLAALGLRVRALREATVRESVALLSGGRLQRRRPTGCTGPPCASTAGSDCPRPTTATAADWLHWASVCEHCRKRLSCLATLKIHMNKHTGERPYKCSLCPKAYMTPYGLNNHQAFHTGVRKWQCPECPATFMHQSSVYQHRKIHTGERSHQCTICEKYFTQSGSLYTHVKYVHMKETPPPRKRNRKPVQQNTSHSPACPTVEPLQIHTGERSHQCTICEKYVSQSDSLNTHVKYVHMKETPPPRKRNKKPVHSRAFGFLEILHTARPVQRYTICENYFSQSGSPNTHVKYVHMKEKACPTVGPFTDKHRRAAPPVRNLREILHAVWLTSNTCKIIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -