Basic Information

Insect: Cydia pomonella
Gene Symbol: sob
Assembly: GCA_033807575.1
Location: CM066359.1:12826710-12830218[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.1e-05 0.0026 19.4 2.6 1 23 307 329 307 329 0.98

2 5 2.5e-07 2.1e-05 25.9 1.8 1 23 335 357 335 357 0.97

3 5 8.7e-05 0.0072 18.0 1.5 1 23 363 385 363 385 0.96

4 5 4.4e-07 3.7e-05 25.2 3.3 1 23 391 413 391 413 0.98

5 5 1.8e-05 0.0015 20.1 4.0 1 23 419 441 419 441 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.1e-05	0.0026	19.4	2.6	1	23	307	329	307	329	0.98
2	5	2.5e-07	2.1e-05	25.9	1.8	1	23	335	357	335	357	0.97
3	5	8.7e-05	0.0072	18.0	1.5	1	23	363	385	363	385	0.96
4	5	4.4e-07	3.7e-05	25.2	3.3	1	23	391	413	391	413	0.98
5	5	1.8e-05	0.0015	20.1	4.0	1	23	419	441	419	441	0.97

Sequence Information

Coding Sequence: ATGCAAGAGCAAAGTTCGTCGCGTTCAAGCAAATCTACCTTGAACTCACTCGAAAGCGCAATCCTCAAGCTCAAGAACAATCTTCAGATACAAGACACCAAGAGCTCCTCAGACATGAACAGCGTTATAACCGTCGACCCGCCATCACCCCGGCCGGATACGAAAAGCAACACAAGTAAGAGCCCTAGTACAACGACAACTACGAATCTGAACTTATCAATTGCATCAGCGGCGTTGTTACAAGAAAATATGCTACAAAGATCTCTGCAAGGTGTTGTACTATCCTTGCAAAACGCCATGATGAATTCATTACAACAAGCTGCTTTGCTGCCTTCGAACTCCGCAGCTGCCGCCGCTTTAAATTTACAAGCATTGGAATCTTATTTGACTTTACAACGTTTAACATCAGTATCATCTGTAAGTAGCACAATTCAGGCTAATACTTCTGAAAACAATTCGACGTCCAAGCAGGATATATTGAGGATAGCGACGGCAAGCGCAAAGATAAGCGAAATAGACGCTACTGAAAATACATCTCGGGATTTTTCCCCAAAAACACCTGAAGACTATCAACTATCTGATGCTATAGCTGCTGAAGATGTAGACTTATCAGAAGAAGTGGAAGAAGATTTGGCTTTATTAGATAACGAAGATGACTTCACATTAGAACAACATTTGGAATCGACATCAAAAAGTTATGCCTATGGATCGTCGAGCTTAGACAATGGGTATCCAAGCCTTTTAATGAATTCTATGTATCAACAACAAATGAATGGAAGTCCGTCTCAGGCACCTTTGTCACCGCAAGCATCAAACACATCTAGCTCCAAATCAACGAATAGCTCAACATCTTCAACGGGTAGCAATATATCAACTAAGCAGAAAACGACTGGAAGCGGACCTAGGATAAAAAAGCAGTTTATTTGCAAATTTTGCAATCGACAATTTACGAAATCATATAATTTGTTGATACATGAAAGAACTCATACGGATGAGCGGCCATATTCCTGTGATATATGCGGCAAAGCTTTCCGACGGCAAGATCACCTTAGAGATCACAGGTACATACACTCGAAGGAAAAGCCGTTTAAATGTCTGGAATGCGGAAAAGGTTTCTGCCAGTCCCGAACACTAGCCGtccataaaattttacatatggAGGAATCGCCTCACAAGTGTCCAGTTTGCAGCAGAAGTTTTAATCAACGATCGAATTTAAAGACACACCTTCTCACTCACACAGACATAAAACCTTACAACTGCTCTTCATGTGGGAAGGTGTTCAGGAGGAACTGCGATTTGAGACGCCACAGCTTGACGCACAACCTCGTTGGAATCTCTTCCGTAGCTACTTCACCTAATGGCAGCAATGGCAAGAGTCCTATCTTAAATCCAAACTTTCCAATTGATGCTCTTGACACTGAAGATGAAAACTAA
Protein Sequence: MQEQSSSRSSKSTLNSLESAILKLKNNLQIQDTKSSSDMNSVITVDPPSPRPDTKSNTSKSPSTTTTTNLNLSIASAALLQENMLQRSLQGVVLSLQNAMMNSLQQAALLPSNSAAAAALNLQALESYLTLQRLTSVSSVSSTIQANTSENNSTSKQDILRIATASAKISEIDATENTSRDFSPKTPEDYQLSDAIAAEDVDLSEEVEEDLALLDNEDDFTLEQHLESTSKSYAYGSSSLDNGYPSLLMNSMYQQQMNGSPSQAPLSPQASNTSSSKSTNSSTSSTGSNISTKQKTTGSGPRIKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCLECGKGFCQSRTLAVHKILHMEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCSSCGKVFRRNCDLRRHSLTHNLVGISSVATSPNGSNGKSPILNPNFPIDALDTEDEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01125805;
90% Identity: iTF_01464480;
80% Identity: -