Cpom013797.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- pol
- Assembly
- GCA_033807575.1
- Location
- CM066350.1:24808935-24828752[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 1.7e+02 4.2 1.2 3 18 262 274 260 279 0.67 2 14 0.0053 0.44 12.3 3.7 1 23 284 308 284 308 0.98 3 14 4.2e-05 0.0035 18.9 3.4 1 23 342 364 342 364 0.99 4 14 0.00011 0.0093 17.6 1.9 2 23 372 393 371 393 0.97 5 14 0.00011 0.0093 17.6 1.9 2 23 405 426 404 426 0.97 6 14 0.00011 0.0093 17.6 1.9 2 23 438 459 437 459 0.97 7 14 0.064 5.3 8.9 1.7 2 23 471 491 470 491 0.97 8 14 0.00011 0.0093 17.6 1.9 2 23 503 524 502 524 0.97 9 14 0.00011 0.0093 17.6 1.9 2 23 536 557 535 557 0.97 10 14 0.064 5.3 8.9 1.7 2 23 569 589 568 589 0.97 11 14 0.00011 0.0093 17.6 1.9 2 23 601 622 600 622 0.97 12 14 0.01 0.87 11.4 2.5 2 23 686 706 685 706 0.97 13 14 0.085 7.1 8.5 1.1 2 23 718 738 717 738 0.97 14 14 1.7 1.4e+02 4.4 6.3 1 20 744 763 744 767 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAATGTAGGATTTGCTTGGAAACCAGGAAGAATGTACGGTGTATATTTAATGGCACAGATGGGGACCTCAATACAACGTTCGCTGACATGATAACATACGTCGCTAGTATTAAGATTACAAGAGAAGACGGGATCACGGACCAGATATGCCTTGCTTGTCGGAAAAAGCTCAAAGAGTTATATGATTTTAAAGTTCTTATACTAAGGTCCAACACTCAACTGCATCAAAAGAACAATTCGAATTTCAAAAGGATCCATTTTAATGACATAACAGATGTCAAGCTTGAAATTGCCGTGGCCCCAACTGATGAGAAATATTTACTCAAAGAATATGAGGATATTAAGATGAACCTGCAGAGTGCAGAAGATTCTGTTTGCTACAATGATACCACAATTAAAAAGGTGGAGCCAAGTTCCATAGAAGTGGAGATAGACAATCAGCCAATGTCAGTCATGGACTTCCTTGACACCATCAAAGATGACCTGGAAAATGACTATGACCAGGATTTCGATGCGGCCCAAGGTGACCCGGACACGGACTCTGATGAGTATTTGCCACACAGCATTATGCAGAAGAAATATGGGAAAAAACACAAGATAAAGAAAAAGACTAAATTGTCAAAACCCACCAAAAACGGAAACACCAAAACAGAAGCCACACCCAACAGGGTCCGTATAAAACCGACGTGGATCGAGGACCTCCGCGTGATGGCCACGTACGAGCCGAAGCGACCGagggagaaaaaaaaatacaagcaaaaaacCAAGGAGGGGATGTGCCCCCACTGCGGCAAGTTCTCCAAGAACCTGACCAGTCATCTTGTGTTTCATAGGGAGCCGCTGTATAAGTGCGGCTTTGAGGGCTGCGGCAGGACGTTCCACCACCGCAGCCCCATGCTGCGCCACGAGCGCACTCACACCGCCGCGCGCGACCACCACTGCGACCAGTGCGTCGCGGCCTTCCACTCGCAGCAGGCGCTCAAACAACATAAAAAATGTCACGACCAGGCAAGAAGATACGTTTGTGAAACCTGCAACAAGTCTTATAAGAGGGGGCACCAGCTATCGCGGCACGTCCGCACCCACAACTCTGCCAACAAGAACATCCAGTGCGAGCTGTGCAACATGTCCTTCTTCTCGCAATTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGAGACCCTACAACTGCGAGAACATCCAGTGCGAGCTGTGCAACATGTCCTTCTTCTCGCAATTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGAGACCCTACAACTGCGAGAACATCCAGTGCGAGCTGTGCAACATGTCCTTCTTCTCGCAATTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGAGACCCTACAACTGCGAGAACATCCAGTGCGAGCTGTGCAACATGACCCTCTCACGGTTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGATACCCTACAACTGCGAGAACATCCAGTGCGAGCTGTGCAACATGTCCTTCTTCTCGCAATTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGAGACCCTACAACTGCGAGAACATCCAGTGCGAGCTGTGCAACATGTCCTTCTTCTCGCAATTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGAGACCCTACAACTGCGAGAACATCCAGTGCGAGCTGTGCAACATGACCCTCTCACGGTTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGATACCCTACAACTGCGAGAACATCCAGTGCGAGCTGTGCAACATGTCCTTCTTCTCGCAATTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGAGACCCTACAACTGCGAGCCCGGTCTACAAGAACATCCAGTGCGAGCTGTGCAACATGACCCTCTCACGGTTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGAGACCCTACAACTGCGAGGTACAGTAGAGCACCTAGGACACCTCATGAGGCGCCCGGTCTACAAGAACATCCAGTGCGAGCTGTGCAACATGTTCTTCTCACGGTTCGGGCTGAGACACCACATGAGGGTGCACACCGGGGAGAGACCCTACAACTGCGAGAACATCCAGTGCGAGCTGTGCAACATTGCCCTCTCACGGTTCGGGCTGAGACACCACATGAGGATGCACACCGGGGAGAGACCCTACAACTGCGAGCTCTGCTCGCAGCCGTACAGCTACAAGCACGACTTCAACCGGCACTGCCTGAAGAAGCACGGCGTGTTCCTCAAGCGGCGCTCGGTCAACGTCATGAACGCGGAGatAAAATCCATAcgtatacatatacatagaaaacatgcaAAAGAGAAAGCAGATCTTTTATGTTCTCTTTTTGCGTCAAATTCGACACTAGACGACGTGGGCAGCACACCACCCACCATCCCACGTTGTGAGCATTCCATGCCCAAGGTCCGCTTCACTCAAAGCGTAGTAAGGCGTGCACTTTTTGCTCTCGATGTCAATAAGTCCAGTGGGCCCGACGGTATACCCGCTATTGTGCTAAAAACATGCGCTCCAGAGCTAGCTCCGGTTTTAACGCGCCTTTTCTCGCTTTCATACTGCTCAGGTAAATGCCCGTCATCCTGGAAGACTGCTTGGGTCCATCCAATCCCTAAAAAGGGTGACCGCACAAACCCTTCCAACTACCGGCCGATTGCGATTACCTCCCTTCTCTCCAAGGTGATGGAGCGCGTGGTTAACAACCAGCTCCTAGCGTACCTTGAGGACCACCAGCTCATAAGTGACCGGCAATACGGCTTCCGCCATGGTCGTGGCGCTGGTGATCTTCTGGTATATCTCACTCATCGTTGGGCCACCGCCATTGAGAGTAAGGGAGAAGCTCTGGCGGTTAGCCTAGATATCGCAAAGGCTTTCGATAGGGTTTGGCACAAGGCGCTTCTTTCCAAGCTTCCCTCGTACGGGCTTCCTGAAGGGCTATGCACATGGGTCGCCAGCTTTCTATCTGGGCGTAGCATTGCAGTTGTCATCGACGGACAATGCTCAGATCTCCGGCCCATTAACGCCGGCGTACCCCAAGGATCTGTACTGTCACCTACACTGTTCATCCTTCATATCAATGATATGCTATTGACTAGCAATATCCATTGCTATGCGGATGACAGCACGGGTGATAGCTTCTATACAGGTCGTGCAAATGCATCTCGTGAGCAGGTGTTGGAATGCAGAATGCAACTTGTGTCCGAAATCGAGGCCTCTCTTGAGCAGGTATCCGAGTGGGGTAAACGTAATCTCGTCCAGTTTAACCCCagtaagacacaagtttgcgcgatttccgctaagaaaaccccatttgtcTTAGCGCCTAAGTTCCAGAACATTCCCCTTGCCATTTCTAAGAGTATCGGGATACTCGGTGTCGACATTACGAACGAAGTCCAGTTTCggggccatttggaactcaaagccaaactggcctctaagaagctcggggtgctcaatagagcgaaacagtacttcacaccaggtcaccggctttcgttatacaaagcgcaggttcgaccacatatggagtactgttctcacctctggtctggagcaccgaaataccaacttcttccacttgactccatccaacgtcgggcagttcgtattgttggtgaccccgatctcacagtcggtttggaacccctcagtcttcggagagacgttggctctctatgcctgttctaccgtctgtacaatggggaatgttctgaagaactttttgaattggtgccaccgtcacgtttttatcaccgcacatcccgccaaagaaacaaagttcatcctcactttctcgacacgtggcaaaccaagaacaagcgggcatctcgctcgttttttcccagaacgtgcaagttgtggaatgagctaccttctgaggtgtttcccttgcgctatgacatggggttcttcaagaagcaggtttttagggttctcaaaggttggcaacgcataagtggctcctccgatgttgcttatgtccatgggcggcgatga
- Protein Sequence
- MSECRICLETRKNVRCIFNGTDGDLNTTFADMITYVASIKITREDGITDQICLACRKKLKELYDFKVLILRSNTQLHQKNNSNFKRIHFNDITDVKLEIAVAPTDEKYLLKEYEDIKMNLQSAEDSVCYNDTTIKKVEPSSIEVEIDNQPMSVMDFLDTIKDDLENDYDQDFDAAQGDPDTDSDEYLPHSIMQKKYGKKHKIKKKTKLSKPTKNGNTKTEATPNRVRIKPTWIEDLRVMATYEPKRPREKKKYKQKTKEGMCPHCGKFSKNLTSHLVFHREPLYKCGFEGCGRTFHHRSPMLRHERTHTAARDHHCDQCVAAFHSQQALKQHKKCHDQARRYVCETCNKSYKRGHQLSRHVRTHNSANKNIQCELCNMSFFSQFGLRHHMRVHTGERPYNCENIQCELCNMSFFSQFGLRHHMRVHTGERPYNCENIQCELCNMSFFSQFGLRHHMRVHTGERPYNCENIQCELCNMTLSRFGLRHHMRVHTGEIPYNCENIQCELCNMSFFSQFGLRHHMRVHTGERPYNCENIQCELCNMSFFSQFGLRHHMRVHTGERPYNCENIQCELCNMTLSRFGLRHHMRVHTGEIPYNCENIQCELCNMSFFSQFGLRHHMRVHTGERPYNCEPGLQEHPVRAVQHDPLTVRAETPHEGAHRGETLQLRGTVEHLGHLMRRPVYKNIQCELCNMFFSRFGLRHHMRVHTGERPYNCENIQCELCNIALSRFGLRHHMRMHTGERPYNCELCSQPYSYKHDFNRHCLKKHGVFLKRRSVNVMNAEIKSIRIHIHRKHAKEKADLLCSLFASNSTLDDVGSTPPTIPRCEHSMPKVRFTQSVVRRALFALDVNKSSGPDGIPAIVLKTCAPELAPVLTRLFSLSYCSGKCPSSWKTAWVHPIPKKGDRTNPSNYRPIAITSLLSKVMERVVNNQLLAYLEDHQLISDRQYGFRHGRGAGDLLVYLTHRWATAIESKGEALAVSLDIAKAFDRVWHKALLSKLPSYGLPEGLCTWVASFLSGRSIAVVIDGQCSDLRPINAGVPQGSVLSPTLFILHINDMLLTSNIHCYADDSTGDSFYTGRANASREQVLECRMQLVSEIEASLEQVSEWGKRNLVQFNPSKTQVCAISAKKTPFVLAPKFQNIPLAISKSIGILGVDITNEVQFRGHLELKAKLASKKLGVLNRAKQYFTPGHRLSLYKAQVRPHMEYCSHLWSGAPKYQLLPLDSIQRRAVRIVGDPDLTVGLEPLSLRRDVGSLCLFYRLYNGECSEELFELVPPSRFYHRTSRQRNKVHPHFLDTWQTKNKRASRSFFPRTCKLWNELPSEVFPLRYDMGFFKKQVFRVLKGWQRISGSSDVAYVHGRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -