Cpom036720.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066370.1:10105350-10134886[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1 85 5.1 5.6 1 23 277 300 277 300 0.98 2 14 0.002 0.17 13.7 0.5 2 23 308 329 308 329 0.95 3 14 2 1.6e+02 4.3 0.9 1 20 333 352 333 355 0.85 4 14 5.4e-05 0.0045 18.6 2.6 1 23 360 383 360 383 0.97 5 14 0.00063 0.052 15.3 0.1 2 23 392 414 392 414 0.94 6 14 0.2 17 7.3 0.3 3 23 453 473 452 474 0.93 7 14 5.5e-05 0.0046 18.6 0.7 1 23 479 502 479 502 0.95 8 14 5.3 4.4e+02 2.9 0.1 3 11 531 539 530 541 0.86 9 14 7.5 6.2e+02 2.4 0.1 3 10 569 576 568 578 0.87 10 14 7.5 6.2e+02 2.4 0.1 3 10 633 640 632 642 0.87 11 14 7.7e-05 0.0064 18.1 0.1 3 23 697 717 696 717 0.98 12 14 0.00031 0.026 16.2 0.1 1 23 723 745 723 745 0.95 13 14 0.061 5.1 9.0 0.9 2 23 752 773 751 773 0.95 14 14 6.4e-06 0.00054 21.5 0.4 1 23 779 802 779 802 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCAGTCAAGTCGGAAGCGGCGGCAGATCTACGCGCGTGTAGAATATGCCTCGCGACGGATACCAAACTGTTCGGCATCTATGAGCAGCGGTTAGATGAGGCTTTTATCGATATTATGGGCACTACGctttCAGTGTGGGATGGGTGTCCTCAACATCTATGTGCGCTGTGCGGCGCACAGCTCATCAAGGCGCAGGCGCTGCGCGCTCGTGCGCACCGCGCTGACGCGCTGCTCAAGCAAGCACTCATGCACCAACATATTATAACAACAAGCTACCTGGCAACGTTAGACCGCGTGTCGCAGCAGCTCGCGCTCTGCCTGTCCATCCACCATCCCGCCATCATGGAGACCACACACAATGAGACCAAACAGGAGATGGAAGATGACGACTTTGACATGTATCACCCAGaattCGACGAGCCCATAATCAACCTAAAGAACACTATGTTGCTGGAGAGTATGAAAGAGACGGAGCTACACGCGGAGGACATTAAGACGGACATGAGCGAGATGGAGATAAAGGAGGAAGAACCTGTCAAAAAGAGGAAAGATAAAGTCAGAAGGGAAAAGGTGAAAGTGAAAAGAGACAAGAGCATAAAGACAAAGAAGAAAGTCCAGAAGGTACAAGAAGTAGAGGAAGAACAGAAGGAACCAAAGAAGTACAAGCGGAAACTGAAGGGGTTCAAGAAGTTCTTCGCTAGTGAGGACGATTATATCAAGTTCGAGAACACTTACAATATAGAGATAGTAAAGCTATCAGAAGAAGAGCAGCAAAAAGAGCTAGACGCACGCAAAGAGTCGAGCAACTACCTCCGCTCGGCGTACCGCTGCGAGAGGTGCTTCAAGGGGTTCCTGTCGCACACCACCTTCGAGAACCACCAGAAGAAGACACACGACCCGAGTAACGGGCGCAACGAGTGCGTCCTGTGCGGGGCTCGCTTCCGGCACCCGGCTGGCCTCAGGAAGCACTTCGAGTCGCACACTCTCAAATTCATATGCAAGATTTGCCAGTTCATGACAAGACACcgGAGCATGGCGGTGATGCACGCCGACTTCCACTCGGGGAAAACCTTCGTCTGCAAATACTGCGGCCTTACCTTCAACAAACAGACCACATTCAACACGCATACCCGTGTGCAGCACCCTTTAGAGAATGCCTCGGCGGGCACGTGCGACGTGTGTGGCGAGACCTTTACTGGCAAGCGGGGGCTGCAGCAGCATAAGGCCATCGCGCATAAGAAGCTCACAACGCCAGAACTAAAATGCCGCTCATGTCTGGTTCAGTTCGAGAACGTTGACGCGAAAACACGTCACAAGATCAATAATGTCTGCGACCCGAAATTTAGgccGTGTCCGGCGTGCGGCGAGCGGTTCGAAGACGAGGAAAGAGCGAAGAAACACTACCAGGACCACCACGTCAAGGAACACTACAAATGCGACCAGTGTGACACAACGTTCGCGAAAAAATCCTCCCTGGCCGTCCACTTCGAGCGAGTCCATCTCAAGATCAAACCGAAGAAACCCGCCTTTTACAAGTACCACCAGTACGGGAAGGGCCGCATGAAGATACGGAACGCCGAGATCTGCGAGATCTGTGGGAAAGGATATCCGAGCGGCGAGCGTGTGACACCCCTGGAGCAATTGTACAAGTACCACCAGTACGGGAAAGGCCGCATGAAGATACGGAACGCCGAGATCTGCGAGATCTGTGGGAAAGGATATGTGGTAATACGGGAAAGGCCGCATGAAGATACGGAACGCCGAGATCTGCGAGATCTGTGGGAAAGGATATGTGGTAAGTTGAGCGTCGAGCGTGTGCCACCCCTGGAGCAGTTCTACAAATACCACCAGTACGGGAAAGGCCGCATGAAGATACGGAACGCCGAGATCTGCGAGATCTGTGGGAAAGGATATGTGGTAATACGGGAAAGGCCGCATGAAGATACGGAACGCCGAGATCTGCGAGATCTGTGGGAAAGGATATGTGGTAAGTTGAGCGTCGAGCGTGTGCCACCCCTGGAGCAGTTCTACAAATACCACCAGTACGGGAAAGGCCGCATGAAGATACGGAACGCCGAGATCTGCGAGATCTGCGGCAAAGGATATCCGGACACGACGTGGCTGCGGTACCACCAGCGCACACACACGGGCGAGCGGCCCTACAAGTGCGCGCAGTGCCCCAAGAGCTACATGACCCCCGCTGGTTTACAGCGTCACGCGGTGATCCACACGGGCGTGCGGCGCTGGCAGTGCGCGGAGTGCCCCAAGACCTTCCTGCACCAGTCCTCCATCTACACGCACAAACTGGTTCACACGGGTGAGAAACCATACGTCTGCCAAATCTGCAGCAAGGCGTTCACTCAGTCAGGGTCCCTGCAAACTCACGTCAAGTACGTCCACATGAAGCTAAAACCTCCTCCGCGACGTCGCCGACAAGAACTTTATAAGCCGCCCAGCTGA
- Protein Sequence
- MAAVKSEAAADLRACRICLATDTKLFGIYEQRLDEAFIDIMGTTLSVWDGCPQHLCALCGAQLIKAQALRARAHRADALLKQALMHQHIITTSYLATLDRVSQQLALCLSIHHPAIMETTHNETKQEMEDDDFDMYHPEFDEPIINLKNTMLLESMKETELHAEDIKTDMSEMEIKEEEPVKKRKDKVRREKVKVKRDKSIKTKKKVQKVQEVEEEQKEPKKYKRKLKGFKKFFASEDDYIKFENTYNIEIVKLSEEEQQKELDARKESSNYLRSAYRCERCFKGFLSHTTFENHQKKTHDPSNGRNECVLCGARFRHPAGLRKHFESHTLKFICKICQFMTRHRSMAVMHADFHSGKTFVCKYCGLTFNKQTTFNTHTRVQHPLENASAGTCDVCGETFTGKRGLQQHKAIAHKKLTTPELKCRSCLVQFENVDAKTRHKINNVCDPKFRPCPACGERFEDEERAKKHYQDHHVKEHYKCDQCDTTFAKKSSLAVHFERVHLKIKPKKPAFYKYHQYGKGRMKIRNAEICEICGKGYPSGERVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYVVIRERPHEDTERRDLRDLWERICGKLSVERVPPLEQFYKYHQYGKGRMKIRNAEICEICGKGYVVIRERPHEDTERRDLRDLWERICGKLSVERVPPLEQFYKYHQYGKGRMKIRNAEICEICGKGYPDTTWLRYHQRTHTGERPYKCAQCPKSYMTPAGLQRHAVIHTGVRRWQCAECPKTFLHQSSIYTHKLVHTGEKPYVCQICSKAFTQSGSLQTHVKYVHMKLKPPPRRRRQELYKPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -