Cpom034626.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- ZEB2
- Assembly
- GCA_033807575.1
- Location
- CM066368.1:5276229-5279410[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.6 3.9e+02 3.1 5.7 1 13 82 94 82 107 0.69 2 9 3.8e-07 3.2e-05 25.4 1.7 1 23 158 180 158 180 0.98 3 9 0.0011 0.092 14.5 4.2 1 23 186 209 186 209 0.93 4 9 0.00016 0.013 17.1 1.1 1 23 216 238 216 238 0.97 5 9 7.8e-05 0.0065 18.1 1.2 1 23 255 277 255 277 0.98 6 9 1.5e-05 0.0012 20.4 3.4 1 23 283 305 283 305 0.97 7 9 5.5e-06 0.00046 21.7 2.4 1 23 311 334 311 334 0.96 8 9 7.7e-05 0.0064 18.1 0.5 1 23 340 362 340 362 0.96 9 9 0.00068 0.057 15.1 2.1 1 23 368 391 368 392 0.94
Sequence Information
- Coding Sequence
- ATGAAAATCAAGTTCGAGAGAGCTGCTGGAGAGGAAACCATCATACCCGACATCAAGCTGGAGAGGTCCGAAGTGGAGATGGCTGACGGCGAAGTAGTATCAGTGGCCATATACGGAGGGCCATCAGGCCCTTCAGCACAACCCGTTCCGACTGCGTCCAACCACGTCACTTTTATGCTGGAACCGACCCTCACGGACCTCGACGATTCTAAGTCGGCTCCTGCTTCCGACCGCGGTAAGGTCTACGAATGCGAAATATGCCAAAGAAGGTTCCAGAACCCATGTGCGAAAAGAAAACTCATGATCCATCGCCGCTCCCACACTGGAGAGAGACCTTACTCGTGCGACGGGACTTTAGCTAAACATATGGAGAAACACGATGAGAAGAAAGGTAATAAGGATTACAGTGAAGGTTCAGGAGAAACCACAGAATGCAAAAAAGAGTATTCGGAAAAATTTAAAAGACAAACGTACGATTGCGATACATGTAATAAACAATTCAAAAGCAAAGACTATTTGATTGAACATATGCGAACACACACTGGTGAAAAGCCTTATACCTGTGAATTATGCCAAAGGAAGTTCAGATTTAAAGGTAGCTTTAAAAAACACTTATTTGAAAAACACAACATTGCTGACAAACCATTTTGTTGCGATATTTGTGGCAAACTATTTGCACTGCGAGGGCCTCTAactaaacatattaaaaaacatCTTCAGAAAGAAAAGCAGGATAAAACGCAAAAGGAAGAACCAAAGGATTTTATGTGTGAAATATGTAGCAAACGATTTTCAACAAAGGGTATCTTAAAAAATCATAGGATAACGCACTCTGAAGAAAGACCTTTTGCGTGCGAAATTTGTCAGAAGACATTCCGAAAGAAGAGACATTTACAGGACCACAAGATGGTGCACGAGGACTTTAAACAACACTCATGTGAAGTATGCGGGCAACAATTTAGGCATAAATCTGCCTTAACAGTTCATATCCAAAGACTTCATACAGAAAGTAAGCCACATGCATGCGATGTTTGCAAAAGGCCATTTTCGGTCCTTGCCGAATTAAAAACGCATTATCGGGTACACACTGGTGAGAGGCCATACGCTTGTGAAATATGCTATAAGAAATTTCCAAGACACGACGCGGTTAAAAGACATCTTGTACGAGTTCACCATGAGAAGCCTAacaaattcattaaattaaaagaaTTTAATAATCCTTACTGA
- Protein Sequence
- MKIKFERAAGEETIIPDIKLERSEVEMADGEVVSVAIYGGPSGPSAQPVPTASNHVTFMLEPTLTDLDDSKSAPASDRGKVYECEICQRRFQNPCAKRKLMIHRRSHTGERPYSCDGTLAKHMEKHDEKKGNKDYSEGSGETTECKKEYSEKFKRQTYDCDTCNKQFKSKDYLIEHMRTHTGEKPYTCELCQRKFRFKGSFKKHLFEKHNIADKPFCCDICGKLFALRGPLTKHIKKHLQKEKQDKTQKEEPKDFMCEICSKRFSTKGILKNHRITHSEERPFACEICQKTFRKKRHLQDHKMVHEDFKQHSCEVCGQQFRHKSALTVHIQRLHTESKPHACDVCKRPFSVLAELKTHYRVHTGERPYACEICYKKFPRHDAVKRHLVRVHHEKPNKFIKLKEFNNPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -