Cpom038772.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- JAPFFR010000134.1:411088-430287[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.019 1.6 10.6 0.6 1 23 295 317 295 317 0.96 2 12 0.00046 0.039 15.7 0.7 2 23 325 346 324 346 0.94 3 12 0.13 11 8.0 0.8 1 23 350 372 350 372 0.97 4 12 0.0017 0.14 13.9 0.9 1 23 377 400 377 400 0.98 5 12 0.015 1.3 10.9 0.1 1 23 404 427 404 427 0.94 6 12 0.013 1.1 11.1 0.1 2 21 445 464 445 469 0.92 7 12 0.41 34 6.4 0.2 3 23 479 500 479 500 0.93 8 12 0.38 32 6.5 0.6 2 23 519 541 519 541 0.97 9 12 1.4e-05 0.0012 20.4 0.5 1 23 552 574 552 574 0.98 10 12 2.2e-05 0.0018 19.8 2.0 1 23 580 602 580 602 0.99 11 12 0.016 1.3 10.8 2.5 1 23 608 630 608 630 0.98 12 12 9.8e-05 0.0081 17.8 0.3 1 23 636 659 636 659 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACGTGAAAGTTTGCCGAATATGCCTTGTTATGGGAGTAAAGATGTACAACTTGCATACATACCCATTGTATGGTTACTTTGAATCACTTATTGGGATCAATCCACTAAGCATGATGGAGCTCCCTCCATATGGATGTTATGAATGCACTGCGCTGATGAAGAAGCTCTATAACTTTAAGGAGCGTTGTCTCCTTGGCCAGGCAGAGCTGTATGCTGTGTTGCAGGCAACCGGAAAGATTACAGCGGATGCGTTAAACAGTATAGACCGCCGGCAACTCAAATTAATCTCTAATTTATCCATAAGCCAtgacaataatataatatcctATGAATATGACGATAATGTTGAAGTTAAAATAGAGTCCCCTAAACCCGCCAACGCTGATTTTCTCATTGAAATTGATACTATTAAGCAAGAAGACTACGATGACTTCATAATGACTAATATGTCAAGTGATGACGAGCCTCTTTCATTACAAAAGAGTATAAAAGAAAAGAAGAAGTCTGttaagaaaaaagaaaagagGGGACggaagaaaaaagaaaaagaagttGGTTTAGAATGTAATGGAGAGTTACGGGGTATTGAGGCCACCGACATACCGATGGCTCTGGAATCCGAAGCCCTAGAAGCCTCAGAAGCCCAAGAGGTCTCAGAGCTCCCAGAGGCCCCGAAAAAGAAGCGAGGCCGGCCGCGGCTGTCGGAGGCCAAGAAAGAAGCGAAGCCTAAGTCCCGACGGACTCGCAATACTGGGGGCGTGGGCGTGGATGATATAGATCTTGAGGAGTATGTTACGGTTGTTAAGTTGACTCCCGAAGAGCAGCTAGCCGAGATAACCAAACGCCAGCAGTCCTCAAACTACCTGAACGCTCCGTTCCAGTGCAATCTTTGCTATAAAGGCTTCATAGACGCGCTAGCTTGGAAACATCATGTTGGCAAACATGATCCGAGCGCAGGCGAAGTGGAGTGCAACATCTGCAAGTTCCGCTTCCGCTCCAGGCGCGCACTGCAAAAGCATGCCGCCAACCACGAGAAGAAATACGCCTGTCGCTCCTGTCCTTACGTCTCGAAGACTACAACGCAAGCGAAGCAACATCAAAGATGGCATAAAGGGGTTACATACAAATGCCAGTACTGCGACGAGATATCAACTAAATGGACGTCATACCTAAGCCACGTGCGAATCAAGCACCCCTCGGAATTCATATGCGGAGTGTGTGGATACTCTTACGTCAGCAAACTCGGGCTGGCCATGCATAAGACCATGATGCATAAGGATTATGTTGAAAAGACTGAACCGGACGCAGACGCGGAACCAGGTCCGTATTGCCAGGAGTGCGACGTACAGTTCGTGACGGAGGAGGCGTGGAAGCGGCACATGGTCACCTCCGCCAAGCACGCGCCGTCCAACGACTTCAAGAACGGGTGCCGCGCGTGCGGCAGCGTGTTCGCGACGGGCGAGGAGCTGCGCCTGCACCACCGCGCCGCGcacgcgcgccgccgccccaAGAACTACGGCAAGAAGCGGGAGCAGGCCTGGCCCGCGCGCTGCGAGCATTGTTCGGAAGAGATCCCGAACGCCCGTGAATACTGGACTCACTTCCGTCGCGCGCACCCGGACAAACCGTACCCCATACAGAAGAACTACATCTGCGATATTTGTGGCAAAAGTTTTAGGGGCAACGCCTTCCTGGTCTACCACAAACGGACCCATTTCGAAGAGCGCGCCTACAAATGTGCCGTCTGCCCCAAAGCGTTCCACAACCGAACCAACCTGCAGATGCACGAGAAGACTCACTCAGACGCGCGGCCCTACCCGTGCTCTGTCTGCTTTAAGGCATTCAAGTGTAAGGGGGCACTCGACAGACACTTTAGGagCCACACTGGCGTAAAACCATACTCGTGCGAAGTATGCGGCAAGGCGTTCGGGCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTGCGCCAGCCCGCGCCCTACGTCAGccgcgcccggcgccgcgcgccgccgcccgccgactAA
- Protein Sequence
- MEDVKVCRICLVMGVKMYNLHTYPLYGYFESLIGINPLSMMELPPYGCYECTALMKKLYNFKERCLLGQAELYAVLQATGKITADALNSIDRRQLKLISNLSISHDNNIISYEYDDNVEVKIESPKPANADFLIEIDTIKQEDYDDFIMTNMSSDDEPLSLQKSIKEKKKSVKKKEKRGRKKKEKEVGLECNGELRGIEATDIPMALESEALEASEAQEVSELPEAPKKKRGRPRLSEAKKEAKPKSRRTRNTGGVGVDDIDLEEYVTVVKLTPEEQLAEITKRQQSSNYLNAPFQCNLCYKGFIDALAWKHHVGKHDPSAGEVECNICKFRFRSRRALQKHAANHEKKYACRSCPYVSKTTTQAKQHQRWHKGVTYKCQYCDEISTKWTSYLSHVRIKHPSEFICGVCGYSYVSKLGLAMHKTMMHKDYVEKTEPDADAEPGPYCQECDVQFVTEEAWKRHMVTSAKHAPSNDFKNGCRACGSVFATGEELRLHHRAAHARRRPKNYGKKREQAWPARCEHCSEEIPNAREYWTHFRRAHPDKPYPIQKNYICDICGKSFRGNAFLVYHKRTHFEERAYKCAVCPKAFHNRTNLQMHEKTHSDARPYPCSVCFKAFKCKGALDRHFRSHTGVKPYSCEVCGKAFGQSNSRKLHVRTVHLRQPAPYVSRARRRAPPPAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410638;
- 90% Identity
- iTF_00410638;
- 80% Identity
- -