Cpom005004.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066345.1:33526060-33532743[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00026 0.022 16.4 0.1 2 23 119 141 119 141 0.94 2 25 0.023 1.9 10.3 1.8 3 23 147 167 147 167 0.97 3 25 1.1 92 5.0 3.8 3 23 174 195 174 195 0.98 4 25 0.061 5.1 9.0 0.4 2 20 204 222 203 226 0.93 5 25 8.7e-07 7.2e-05 24.2 1.3 1 23 231 253 231 253 0.98 6 25 0.011 0.89 11.4 0.3 1 23 259 282 259 282 0.93 7 25 0.44 37 6.3 0.8 2 21 288 307 287 308 0.90 8 25 4.8 4e+02 3.0 0.1 3 11 314 322 312 324 0.84 9 25 0.42 35 6.3 0.2 3 21 342 360 341 361 0.91 10 25 4.8 4e+02 3.0 0.1 3 11 367 375 365 377 0.84 11 25 0.42 35 6.3 0.2 3 21 395 413 394 414 0.91 12 25 4.8 4e+02 3.0 0.1 3 11 420 428 418 430 0.84 13 25 0.22 18 7.2 0.2 3 21 448 466 447 467 0.92 14 25 4.8 4e+02 3.0 0.1 3 11 473 481 471 483 0.84 15 25 0.42 35 6.3 0.2 3 21 501 519 500 520 0.91 16 25 4.8 4e+02 3.0 0.1 3 11 526 534 524 536 0.84 17 25 0.42 35 6.3 0.2 3 21 554 572 553 573 0.91 18 25 4.8 4e+02 3.0 0.1 3 11 579 587 577 589 0.84 19 25 0.42 35 6.3 0.2 3 21 607 625 606 626 0.91 20 25 4.8 4e+02 3.0 0.1 3 11 632 640 630 642 0.84 21 25 0.22 18 7.2 0.2 3 21 660 678 659 679 0.92 22 25 0.54 45 6.0 0.1 6 23 729 744 727 744 0.80 23 25 0.0003 0.025 16.2 1.1 1 23 750 772 750 772 0.98 24 25 0.0037 0.31 12.8 1.4 2 23 779 800 778 800 0.98 25 25 6.5e-05 0.0054 18.4 0.7 1 23 806 828 806 828 0.98
Sequence Information
- Coding Sequence
- ATGAATTTGTGTAGAGCGTGTCTGTCTGCGGACAAAGAATTGTTTCCTTATGATGATAATTTTTCTTGCAAttacaatttgcttactaatATAAACGTCAAATATTCTGATGGGAAGCCTCAATCTTTTTGCCAAAATTGCATAGATGCTGTCAACTGTTTCATGGAGTTCAGGAATAAATGTATTTCTTCTGAACAGACATTGCTAGGGATAGTGGAACAgGCACTAAAAGTCGAGTCTCATGGCATTAAAATCGAAATAAAGTGTGAAACTGAGGATTTTGCCACTGATACTTATTTTGATGATAAGCTTTTGGACTCTGCTGAGAATGTTGGTGCTGatattaaaaaagaagaatGCAATGGGTTATGTGGTAAAGAATTCAAAGATGCAGCCACATTAAGCAAGCACATAGAAGAGCATGACATTGTCCAAGGCTGCAAGTTCTGCCAGGCCACGTTCGAGCATCGCGCGCAGCTGTTCGCGCACCGCATACTGCACACGGTGCACAGCCAGGGCTGCCATCTGTGCGCTATTAGATTCAAGTCGCATGCGAACTTGGAGTTTCATTATAGGAAGATACATTTTGGGGAAAAGAATGCTATGCTGAAATGTGATCTGtgtataaaaaagtttaataatcCTAGAAAATTAGCAAAACACATATGGAGCTTGCATGGTAATAAGGAATACACCTGTGATATTTGTTCcaaaaaGTTTAGTAACAAAGCCAATTTAAAGACCCACGTGTTGAGCCACAGCGACGTCAAGCCGCACGTGTGCGACCTCTGCGGGTATAGCAGCAAATATGCCTCGGGTCTCGCAGCCCACAACATTCGGCGGCACGCGCCCACCAAGTGCATCTGCAAGATATGCGGCAACGCGTACGGCAACGCCGAGAGACTCGCCCGGCACTCCTGCACCGACACCAGTCAGATATGCCCCGTGTGCGGCAAGAATGTTCGGCGCGGGGTAACTATACTACCTACTACGTACTGTAACAAGGCTTCAGGTCACAACATCTGCAAGATATGCGGCAACGCGTACGGCAACGCCGAGAGACTCGCCCGGCACTCCTGCACCGACACCAGTCAGATATGCCCCGTGTGCGGCAAGAATGTTCGGCGCGGGGTAACTATACTACCTACTACGTACTGTAACAAGGCTTCAGGTCACAACATCTGCAAGATATGCGGCAACGCGTACGGCAACGCCGAGAGACTCGCCCGGCACTCCTGCACCGACACCAGTCAGATATGCCCCGTGTGCGGCAAGAATGTTCGGCGCGGGGTAACTATACTACCTACTACGTACTGTAACAAGGCTTCAGGTCACAACATCTGCAAGATATGCGGCAACGCGTACGGCGACGCCGAGAGACTCACCCGGCACTCCTGCACTGACACCAGTCAGATATGCCCCGTGTGCGGCAAGAATGTTCGGCGCGGGGTAACTATACTACCTACTACGTACTGTAACAAGGCTTCAGGTCACAACATCTGCAAGATATGCGGCAACGCGTACGGCAACGCCGAGAGACTCGCCCGGCACTCCTGCACCGACACCAGTCAGATATGCCCCGTGTGCGGCAAGAATGTTCGGCGCGGGGTAACTATACTACCTACTACGTACTGTAACAAGGCTTCAGGTCACAACATCTGCAAGATATGCGGCAACGCGTACGGCAACGCCGAGAGACTCGCCCGGCACTCCTGCACCGACACCAGTCAGATATGCCCCGTGTGCGGCAAGAATGTTCGGCGCGGGGTAACTATACTACCTACTACGTACTGTAACAAGGCTTCAGGTCACAACATCTGCAAGATATGCGGCAACGCGTACGGCAACGCCGAGAGACTCGCCCGGCACTCCTGCACCGACACCAGTCAGATATGCCCCGTGTGCGGCAAGAATGTTCGGCGCGGGGTAACTATACTACCTACTACGTACTGTAACAAGGCTTCAGGTCACAACATCTGCAAGATATGCGGCAACGCGTACGGCGACGCCGAGAGACTCACCCGGCACTCCTGCACTGACACCAGTCAGATATGCGCTGTGTGCGGCAATAACGTGCGGCTTCAGACCACCGAGTGCATCTGCAAGATATGCTGCAACGCGTACGACGACGCCGACAGGCTCGCCTGGCATTCCTGCATCGACACCAGTCAGATATGGCCCGTGTGCGGCAAGAATGTTCGGCGCGGACTAATCCGTCACATGCGAACCCACACATCAGAACGTCACTTCAAGTGTGAGCGCTGCCCCGCCACATACAAGAGCCGCTCGGCTCTTAAAGAACACCGCGACAAACACGACAACAATCCCACCCAGCAGTGCGAGTACTGCCACGCTCGGTTTTACTCCGGCTCTGTGCTTATCAAGCATCGCCGCATACACACCGGCGAGAAACCCTACGCCTGCACCAAGTGCGACATGCGGTTTACCGGCGGCTACAATCTCAAGCTGCACATGAAGGTCCACGGCGAGAATCTTGTCAACAAGAGAAACCAGAAACAAGATGAATAG
- Protein Sequence
- MNLCRACLSADKELFPYDDNFSCNYNLLTNINVKYSDGKPQSFCQNCIDAVNCFMEFRNKCISSEQTLLGIVEQALKVESHGIKIEIKCETEDFATDTYFDDKLLDSAENVGADIKKEECNGLCGKEFKDAATLSKHIEEHDIVQGCKFCQATFEHRAQLFAHRILHTVHSQGCHLCAIRFKSHANLEFHYRKIHFGEKNAMLKCDLCIKKFNNPRKLAKHIWSLHGNKEYTCDICSKKFSNKANLKTHVLSHSDVKPHVCDLCGYSSKYASGLAAHNIRRHAPTKCICKICGNAYGNAERLARHSCTDTSQICPVCGKNVRRGVTILPTTYCNKASGHNICKICGNAYGNAERLARHSCTDTSQICPVCGKNVRRGVTILPTTYCNKASGHNICKICGNAYGNAERLARHSCTDTSQICPVCGKNVRRGVTILPTTYCNKASGHNICKICGNAYGDAERLTRHSCTDTSQICPVCGKNVRRGVTILPTTYCNKASGHNICKICGNAYGNAERLARHSCTDTSQICPVCGKNVRRGVTILPTTYCNKASGHNICKICGNAYGNAERLARHSCTDTSQICPVCGKNVRRGVTILPTTYCNKASGHNICKICGNAYGNAERLARHSCTDTSQICPVCGKNVRRGVTILPTTYCNKASGHNICKICGNAYGDAERLTRHSCTDTSQICAVCGNNVRLQTTECICKICCNAYDDADRLAWHSCIDTSQIWPVCGKNVRRGLIRHMRTHTSERHFKCERCPATYKSRSALKEHRDKHDNNPTQQCEYCHARFYSGSVLIKHRRIHTGEKPYACTKCDMRFTGGYNLKLHMKVHGENLVNKRNQKQDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -