Cpom033282.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- zfh1
- Assembly
- GCA_033807575.1
- Location
- CM066366.1:13128452-13146135[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.093 14.5 2.8 1 23 223 245 223 245 0.98 2 11 0.41 34 6.4 0.7 1 23 252 274 252 274 0.97 3 11 0.2 17 7.4 0.1 1 23 278 301 278 301 0.91 4 11 5.8e-05 0.0048 18.5 3.3 1 23 308 331 308 331 0.95 5 11 0.00012 0.01 17.5 0.8 2 23 337 359 337 359 0.95 6 11 3.4e-06 0.00028 22.4 0.9 1 23 372 394 372 394 0.94 7 11 0.00077 0.064 15.0 1.6 1 22 400 421 400 425 0.93 8 11 0.00018 0.015 17.0 0.7 3 23 435 456 433 456 0.95 9 11 0.00089 0.074 14.8 0.2 1 23 462 485 462 485 0.97 10 11 3.2e-05 0.0027 19.3 0.3 1 23 494 516 494 516 0.98 11 11 0.0079 0.66 11.8 0.1 1 23 522 545 522 545 0.97
Sequence Information
- Coding Sequence
- ATGGAGCAATCTGATATTGGGTTAAATCTGTATTGTTTTGGGTGTTTGGTTGCGAAGGAGGAAAAGTCATTctattgcctagaactccagAATTCAGTTTTCAAAACAATTATACAGgCTGAATGTCTCTTCCTCTGCTACCTCTGCAAACGGGCCGCGCAAAAAGCAGAGTTGTTCATACAAAATGTCCAAAATAACCATATTCTGCTTCAGAATATACATAGgaTGGAAACTTCCACTTTACAATCAGCTCGGACACAAACTCGGCCTCCGCACCAGCTATCTCCAGTATCCCTAGACATCATCGAGTTAGGAACCGAGTTAACTCAGGAGGTGCATAGTAGGAACTTGGGCTATGATAACCGACTTAACGTAAAGCTAGAGATGAAGGAAGAGAGAGTACCAGATAATTATCAAGATGATAACAgCAGCCAAGAGTCATTTGTAAAAGAGGGCTTACCtctaaaagtattattaaaagAAGAGAAAGAAACAGAACGAGTGGAGGAAAATCCCAAGAAAAGCCCCAGGAAGTATAAGAAGAGAAAGAAGAGGAATGTCGAAGAAGATGATGAGCTAGCCATAATACCGTTCGAAATAACCCGAGAGCAATGCTTGGAGGAGCGCGCGCGCATGGCGCTGGAGCCGCGCTACCTGGCCGCCGCGCACAAGTGCGTTGACTGCGTCAAGGGGTTCAACTACAAGGACAGCTTCGACAAACATATGGAGAAACATAACGAGAGCAATGGCAACTTCGAATGCGACGTGTGCAAGCAGAGAATGAGTACAGAAGAGAAGCTAGTCGGTCACAAGAAATACCACGAAAAGCGGTACCGCTGCCCCTCGTGCGGCATGACGCGCGCCAGCCGCGTGCTGGTGAAGGACCACTACTCGGCGCTCCACTCCTCGCGCCAGGTCAGGCACAGCTGCCCGCACTGCGACAAGACATTCACACGTAAACTAGCATGGCGGAAGCACGTGTCCAGCGTACACGGTCGCGCGAGGGAGACGTGTCAATATTGTAAGAAGACTTATGCCAACAAAGACGTATTGAAGGCGCATATAAACCTccgACACCCAATAGAGGGCACCACAGCCCCAATTGTCAAGTCCCACGTTTGCCAAGATTGCGGGAAAGCGTTCAAGAGTCCTTCGTCACTCAAGATACATAGTGTCAAGCATTCGCCCAACAAAGACTACTATTGTGTCGAGTGTGACAAGAGTTTCAAATCAGCTACAATACTGAAGCATCATTTAAAGACGACGTCAGTGCACGTTAACTACGTCGATTTACCCTTGGCGTGCTCGCACTGCGGCAAGCGGTTCGCGATCCGCCGCGACCTGGAGCAACACGTCAACAGAGTCCATCTCAATATAAAACCATTCCAGTGCGATCGCTGTGAGAAGGCCTACGTGAACGTGTGGTCGCTGAACGAGCATCGCCGCCTGGCGCACGAGGGGTTCAAGCGGCCGCTCAAGTACCCCTGCTCCATGTGCGACAAGGTCTTCGATAGTAACCAGATCCTCAAAGACCACATCCGGACTCACACGGGCGAGCGGCCCTTCCAGTGCGCGCGCTGCCCGGCGCAGTTCCGCCAGGCCGGCACGCTCGGCACGCACGTGCGCCTCGTGCACCTGCGGCTCACCCGGGACGGCcggccccgggccgcggccgagTCGCGGCCTGGACAGGAGCGGGGGTTTGGGCCAGTCCAAACCGACGCAGAGTCGAACCGGTATGGGGACGCGTCTCAAACTAACTAG
- Protein Sequence
- MEQSDIGLNLYCFGCLVAKEEKSFYCLELQNSVFKTIIQAECLFLCYLCKRAAQKAELFIQNVQNNHILLQNIHRMETSTLQSARTQTRPPHQLSPVSLDIIELGTELTQEVHSRNLGYDNRLNVKLEMKEERVPDNYQDDNSSQESFVKEGLPLKVLLKEEKETERVEENPKKSPRKYKKRKKRNVEEDDELAIIPFEITREQCLEERARMALEPRYLAAAHKCVDCVKGFNYKDSFDKHMEKHNESNGNFECDVCKQRMSTEEKLVGHKKYHEKRYRCPSCGMTRASRVLVKDHYSALHSSRQVRHSCPHCDKTFTRKLAWRKHVSSVHGRARETCQYCKKTYANKDVLKAHINLRHPIEGTTAPIVKSHVCQDCGKAFKSPSSLKIHSVKHSPNKDYYCVECDKSFKSATILKHHLKTTSVHVNYVDLPLACSHCGKRFAIRRDLEQHVNRVHLNIKPFQCDRCEKAYVNVWSLNEHRRLAHEGFKRPLKYPCSMCDKVFDSNQILKDHIRTHTGERPFQCARCPAQFRQAGTLGTHVRLVHLRLTRDGRPRAAAESRPGQERGFGPVQTDAESNRYGDASQTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409540;
- 90% Identity
- -
- 80% Identity
- -