Cpom017779.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066353.1:21891668-21904563[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.52 44 6.1 0.3 3 23 201 218 199 218 0.83 2 17 2.4 2e+02 4.0 0.5 2 23 228 252 227 252 0.92 3 17 0.41 34 6.4 0.1 1 14 257 270 257 277 0.86 4 17 0.029 2.4 10.0 0.5 3 23 286 306 286 306 0.96 5 17 2.1e-05 0.0017 19.9 1.3 1 23 312 335 312 335 0.97 6 17 6e-06 0.0005 21.6 1.9 1 23 341 363 341 363 0.99 7 17 4.1e-05 0.0034 19.0 0.5 1 23 369 391 369 391 0.98 8 17 5.8e-05 0.0048 18.5 0.3 1 23 397 419 397 419 0.98 9 17 0.00074 0.062 15.0 0.8 1 23 425 448 425 448 0.97 10 17 0.032 2.7 9.9 0.7 2 23 655 677 654 677 0.95 11 17 6.7 5.6e+02 2.6 0.2 2 12 683 693 683 702 0.81 12 17 0.42 35 6.4 1.0 3 23 711 731 709 731 0.97 13 17 1.3e-05 0.0011 20.6 3.1 1 23 737 760 737 760 0.97 14 17 0.57 47 5.9 7.1 1 23 766 788 766 788 0.97 15 17 9.3e-06 0.00078 21.0 1.1 1 23 794 816 794 816 0.98 16 17 3e-05 0.0025 19.4 1.2 1 23 822 844 822 844 0.99 17 17 0.0019 0.16 13.8 1.8 1 23 850 872 850 872 0.92
Sequence Information
- Coding Sequence
- ATGGATTTGTGTAGAACCTGTCTTAAAACTCCGGCCAATAAGGCATTGTTAGACCTAGAAAAGGGTATAAATGTTGACGACAAAAACTACCTCGAAATCATGGTGTTTTGTTTAGATATTGAGGTAACAAATGACTCAAAAATTACAACAAATCTCTGTAATATTTGCTACAGAAAAATCATTTCGTTTTACAAGTTTAAGGCGCTATCTCTAAAAAATGATGCCTATTTAAAATCTTTGAACCAAGTTATATCGCAAGAGGATCAAAAACTGTCAGTGTATGTCGATGAAAATGGAATCAAACATGAGAACCCCTTGGAAACTGACGAATATGGTTCTTGTATAGTTGAAGAgtacaaaaaagaaataaaactagAAATAGATGTGAAAAATGAAGTCAAATTTGAAGATGAAGATATCAAGAATGAAAAGCGATTAAGAGACATTCAAATAGAAGCTCAGGATGTTGACACATTGGAAGACATAGAGTCGGACACACagagtgtaataaaaaaaataaaaaattataagacCAAAAGAACAAGTCAAGTAAAAATTAGTAAAAAACGTGGTCATCCACCTAAACCGGAGTACCAAATGTGTGAGGAATGCGGCAAACCAGTCCGTAACCTGAAGCAGCACATGGACCTCCACAAGCCTAAAAGTGAGCGGAAGATGCTGCCATGCAAGGTGCCAGACTGCCCTAAGCTCTTCTTCACCTATCGGGGTCAGAAATACCACTACAAAAGTACACATTTAGGCTTAAGATTCAAATGCGAAATTTGTAATAAAGAAGTGACGAACTTGTCAGCGCACAAATTGCTCTCCCACAACCCTACCGCCCTCCCGCACGGCTGCGCGTCGTGCGGCCGCCGCTTCCTCTCGCGGTCGGCGCTCGCCACGCACATGACCTCGCACACGCAGGACCATGCGTTTGAGTGTGATGTCTGTCAGAAGAAGTTCCGGTCCAAGCCTTTTCTATCGAGGCATATACGGCAGGTCCACGAGAAAGAGAGAAAATTTCAATGTGAATTTTGTTCAAAGGGTTTCTTCAGAAAGTCTGCACTTAATGATCATTTAAGGACACACACAGAGGAGCGCCCATACAAGTGCGAAGACTGCGGCAAAGCGTTCTCTTGGAGCACCACGTTGAAGAGCCATCGCTTGATCCACTCGGACGAAAAGAGGTTCCAATGCGAACTATGCGACAAGAGCTTTTTGAAACCCGGGTATCTGCGCGCCCACATGATCAGCCACACGAAGGAGAAGCGCTACCCGTGCGCGTTCTGCGGCGCGCGCTTCGGCCGCTCCGACCACCGCAACCGGCACCAGCTCACCGCGCACAAGAAACAACACACATCCAACCTTATCTCCACGTCAACTTGCCTCGAGACTCCAGCCAATAAGAACATTTCGCAGTTGGAAAACGGCATAAATGAGGACAACATAAATTACTACGACATCATGATGTTTTGTTTAGATATCAAGGTGTTTCAAGACTCCAAAATAACAACAAATCTTTGTGACAACTGCTTTGGGAAAATCATatctttttacaaatttaagatGCTGTCTTTGAAAAATGATGCATATTTGAAATCTTTGCACCAAACTTCATCTCTAGAGGACCAAAAACTATCTATAAATTTTGATGGAGAAACAAAGCAAGAACACAAGAATATCTTGGAAAGAGATGAATATAGTCCCAGTTTAGTTGAAAATTGCATTAAAATAGAAATGCCAATTGAGGAGGAAAATATGTTAGAAAATGAAGTAAAGGAAATTGAGGATGAAGACACATCAGATGTTACGGATGATAGTGAAGATGAAACATCAGAAGATGAAAATTCTGACGAAGAACCAAGTGTGGCGGAAAAGATATGTGAAGACTGTGGAATATCGGTGCTGGACCTGAAGGCACACTTGCTTACCCACCAGCCTAAAGACAAGAGGCAGATGCTGCAGTGCAGGGCTTGTCCAAAAATGTTCATCAGCAGAGGGGGGCGGCGGAGGCATTACAAGATCAGGCATTTGGGTGTGAAGGCCAAGTGTGATATTTGCGATAAAGAGGTAGTCCACCTATCAGTGCACAAGCTCCAGGTCCACAACCCATCAGCCCTGCCGTTCGGGTGCGCCACGTGCGAGCGCCGCTTCGTGTGCAAGCCGGCGCTGGAGCAGCACATGACCAGCCACACGCAGCAAGCCGCGTTCGAATGCGAGATCTGCCACAAGAAGTTCCGCGCGAAAGGTCATCTCTCTAGACACATCCGGGAAGTCCATGAAAAAGAAAGGAATCATCACTGTGAACTTTGTTCTAAGGCTTTCTTCTGCAAAAGTACACTTCAAGAACATTTACTGACGCACGGCAACGAGCGTCTGTACCAGTGCACCGAGTGTGGCGTGTCGTTCATGACGAAGAAGTCCCTCAGGACTCACCGCCTCGTGCACAGCGACGTCAAGAGGTTTAAGTGCGAGTTCTGCGACATGAGCTTCAAGTTGAACGGTTACCTCAAACTACACATGATCACGCACACAAAAGAGAAGCGTTACTCTTGCCAGTACTGCGGCAAGCGCTTCGGCCGCCCCGACTCCTGCCGGAGACACGAGGCCGGCCACCAGAAACAAGCTGCAGCCGACTGA
- Protein Sequence
- MDLCRTCLKTPANKALLDLEKGINVDDKNYLEIMVFCLDIEVTNDSKITTNLCNICYRKIISFYKFKALSLKNDAYLKSLNQVISQEDQKLSVYVDENGIKHENPLETDEYGSCIVEEYKKEIKLEIDVKNEVKFEDEDIKNEKRLRDIQIEAQDVDTLEDIESDTQSVIKKIKNYKTKRTSQVKISKKRGHPPKPEYQMCEECGKPVRNLKQHMDLHKPKSERKMLPCKVPDCPKLFFTYRGQKYHYKSTHLGLRFKCEICNKEVTNLSAHKLLSHNPTALPHGCASCGRRFLSRSALATHMTSHTQDHAFECDVCQKKFRSKPFLSRHIRQVHEKERKFQCEFCSKGFFRKSALNDHLRTHTEERPYKCEDCGKAFSWSTTLKSHRLIHSDEKRFQCELCDKSFLKPGYLRAHMISHTKEKRYPCAFCGARFGRSDHRNRHQLTAHKKQHTSNLISTSTCLETPANKNISQLENGINEDNINYYDIMMFCLDIKVFQDSKITTNLCDNCFGKIISFYKFKMLSLKNDAYLKSLHQTSSLEDQKLSINFDGETKQEHKNILERDEYSPSLVENCIKIEMPIEEENMLENEVKEIEDEDTSDVTDDSEDETSEDENSDEEPSVAEKICEDCGISVLDLKAHLLTHQPKDKRQMLQCRACPKMFISRGGRRRHYKIRHLGVKAKCDICDKEVVHLSVHKLQVHNPSALPFGCATCERRFVCKPALEQHMTSHTQQAAFECEICHKKFRAKGHLSRHIREVHEKERNHHCELCSKAFFCKSTLQEHLLTHGNERLYQCTECGVSFMTKKSLRTHRLVHSDVKRFKCEFCDMSFKLNGYLKLHMITHTKEKRYSCQYCGKRFGRPDSCRRHEAGHQKQAAAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -