Cpom008999.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia pomonella
Gene Symbol
PRDM7
Assembly
GCA_033807575.1
Location
CM066347.1:25158650-25170700[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 3.7e-07 3.1e-05 25.4 3.1 1 23 343 365 343 365 0.99
2 10 0.12 10 8.1 1.0 1 23 380 403 380 403 0.96
3 10 5.6e-05 0.0046 18.6 0.4 1 23 408 430 408 430 0.98
4 10 0.0005 0.041 15.6 0.1 1 23 436 458 436 458 0.98
5 10 0.007 0.58 12.0 0.1 1 23 464 486 464 486 0.98
6 10 7.7e-05 0.0065 18.1 4.9 1 23 492 514 492 514 0.99
7 10 3.7e-07 3.1e-05 25.4 0.8 1 23 520 542 520 542 0.99
8 10 8e-07 6.6e-05 24.4 1.1 1 23 548 570 548 570 0.99
9 10 0.001 0.083 14.6 0.2 1 23 576 599 576 599 0.95
10 10 0.0071 0.59 11.9 0.6 3 23 607 627 605 627 0.97

Sequence Information

Coding Sequence
ATGAGCCGTTTCAATCTGAGAAAGCGGGCTCGTGTATGTTACTACGAGCCAGAGGAGCCACCCTTCGATGAGTTCATTTATTGCTCTGAGTGCCGGGACTATGTGTATGAGTACTGCTCAATACATGGACCATTACTTGTTATACCCGATGACAAGGTGCCCGCCGTGACGGGGCTCCCCGCGTTCGTGCCGCGCGCGGCGCTCACTGTCCCAAGAATCTTCCTGCATCTTGCCTACTCGAACATCCCAGGGGCGGGTATAGGCGTTTTTAGCACGCTGACGTTGCCCAGCGGCGTGCGTTTCGGGCCCTACCGAGGTCGCCGTCTCAAGACCGCTCTCGACTCGGGCTACGAATGGCAGATCTACGACCGCAACAACAAGCCGTGCCACGTGGTGGACGCGAGCGACGCCAACAACTCCAACTGGATGCGATACGTCAACTGCGCGCGGCGCTACTCCGAGCAGAACCTGGTCGCCTTCCAGTACCAGGGCGAGCTCTACTACAGGACGGTGAAGATCGTGCCGCGCTTCACGGAGCTGCTGGTGTTCTACGGCGGCGAGTTCGCCGGCCGGCTCGGCCTCGACCTGCGCCGCTACAGCTGGCCCTGCGCCTGCCCGCGCTGTCAACCTCGACTTAGTGCCACAAACGCGGCGAAAACCAACAAAGGAAAAACTCAGAATGAAGAGAAGAAAGAAACAGAtcttaaagaaaatattaattcAAGACAAGCTCTACTAGCCACCCAAAAAGaaccaaaaacaaacaaaaccaaATCGCAAAACAAACAGATGAAAAAAACAGAGATTAAAGATGATGTTAATTCAGGTAAAACTCTAACTGGGACGAAAAAAGAATCAGCGAATATAAATAAACGTAAACTGCAAATTGAATCTAAGACGAAAAATCTTCAAGACCTTTCTTCATCATCTCAAGCTGAGTTGCCAATGAACATGGATGAACAAGAAATTCCTCCTACAAAGGCTGTTGATAGATCCTCAAACAAAACGATCTCGAATGTGAATTGCTACAAATGTGACCAGTGTGGCAAAACATTTTGTGTAAAATCAGACTTAGAGAAACACCTACAATCTCACATTGCATTGAAAGAGGCTAACAGCCTAAGCTCAAGGAAGGAGTTCACGTGTAAAAAATGCAGTAGCCCATTTGATACTCGACTGCTTCTACTGGAGCATGGGAAGAGTCGGCATGGTGTGAAGTACTTCACTTGTTCTGAATGCGAGTATGCAACTAGTATGAAAGGAAATTTACAGACACATTTGAGAATTCATAGTGGCGAGCGGCCATTCAAATGTGGGCAGTGTAGCGCAGCCTTTGCCAGAATGGGTGATTTACGAACGCATGAAAGAATACACACTGGAGATAAACCATTCAAATGTGGACAGTGTAGCGCAGCCTTTGCTAGAATGGGTGTTTTACAAACGCATGAAAGAATACACACTGGAGATAAACCATACAAATGTGAGCAATGTAATGCCGCCTTTGCCCAAAGCTGTCATTTAAAAAGTCACACGAGAACACACACTGGAGATAAACCATACAAATGTGAGCAATGTAATACCGCCTTTGCCCAAAGCAGTGATTTACAAAAACACACGAGAGTACACACTGGAGATAAACCATACAAATGTGAGCAATGTAATGCCGCCTTTGCCCGAAGCAGTAATTTAAAAAGTCACACGAAAACACACACAGGTGACAGACCTTTCGAGTGTAACATCTGTGACTACAAGGCTGCTCAGTCAGCTACTCTAAAGAATCATCTAATGGCGCGGCACTCGGGCCAAAAGCCGTACGGCTGCGACTCGTGCTCGTACAGAGGTGCTACTAAGTATCTTTTAAATAGCCACATGAAAACCCACCGGAAGCTAGTTTCGTTGCTGTAA
Protein Sequence
MSRFNLRKRARVCYYEPEEPPFDEFIYCSECRDYVYEYCSIHGPLLVIPDDKVPAVTGLPAFVPRAALTVPRIFLHLAYSNIPGAGIGVFSTLTLPSGVRFGPYRGRRLKTALDSGYEWQIYDRNNKPCHVVDASDANNSNWMRYVNCARRYSEQNLVAFQYQGELYYRTVKIVPRFTELLVFYGGEFAGRLGLDLRRYSWPCACPRCQPRLSATNAAKTNKGKTQNEEKKETDLKENINSRQALLATQKEPKTNKTKSQNKQMKKTEIKDDVNSGKTLTGTKKESANINKRKLQIESKTKNLQDLSSSSQAELPMNMDEQEIPPTKAVDRSSNKTISNVNCYKCDQCGKTFCVKSDLEKHLQSHIALKEANSLSSRKEFTCKKCSSPFDTRLLLLEHGKSRHGVKYFTCSECEYATSMKGNLQTHLRIHSGERPFKCGQCSAAFARMGDLRTHERIHTGDKPFKCGQCSAAFARMGVLQTHERIHTGDKPYKCEQCNAAFAQSCHLKSHTRTHTGDKPYKCEQCNTAFAQSSDLQKHTRVHTGDKPYKCEQCNAAFARSSNLKSHTKTHTGDRPFECNICDYKAAQSATLKNHLMARHSGQKPYGCDSCSYRGATKYLLNSHMKTHRKLVSLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-