Cpom034459.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066368.1:4180773-4184607[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.098 8.2 8.3 0.2 2 23 127 149 126 149 0.95 2 21 0.95 79 5.3 0.4 2 23 170 191 169 191 0.92 3 21 0.0049 0.41 12.4 0.7 2 23 196 218 195 218 0.94 4 21 7.8 6.5e+02 2.4 0.1 3 23 379 401 378 401 0.91 5 21 0.032 2.7 9.9 0.1 3 23 408 429 406 429 0.94 6 21 0.00029 0.024 16.3 0.3 1 23 434 457 434 457 0.92 7 21 0.0027 0.23 13.2 1.2 1 23 462 485 462 485 0.93 8 21 7.3e-05 0.0061 18.2 3.8 1 23 489 512 489 512 0.97 9 21 0.047 3.9 9.3 0.1 1 23 559 581 559 581 0.93 10 21 0.013 1.1 11.1 1.2 2 23 652 674 651 674 0.94 11 21 0.0015 0.13 14.0 3.4 2 23 680 702 679 702 0.96 12 21 0.0071 0.59 11.9 0.8 1 23 707 730 707 730 0.95 13 21 0.00024 0.02 16.6 1.7 3 23 734 755 733 755 0.97 14 21 0.028 2.3 10.1 4.3 1 23 837 860 837 860 0.97 15 21 8.2e-05 0.0069 18.0 0.2 1 23 932 955 932 955 0.95 16 21 8.9e-06 0.00074 21.1 0.4 3 23 962 983 961 983 0.94 17 21 0.0069 0.57 12.0 0.3 1 23 989 1012 989 1012 0.95 18 21 0.00015 0.012 17.2 0.1 3 23 1019 1040 1018 1040 0.97 19 21 0.0003 0.025 16.2 4.3 1 23 1044 1067 1044 1067 0.97 20 21 0.066 5.5 8.9 0.2 2 23 1074 1095 1073 1095 0.96 21 21 0.047 3.9 9.4 1.6 1 23 1101 1123 1101 1123 0.96
Sequence Information
- Coding Sequence
- atgaaTTCAGGGAAATTTGATAAAGTGAAGACTGAAGAAAACCGCGCGCTGATTCACAACCTGAAGACATGCGACGCCATCTTCGACACTGAGCCTGAAAAAATTCATCCAAATACGGGATTGATGCACACACATGAAACGCACAAAAAGGCCTGCGAAACGGCGAGGCGGCAAAATCTGGAAACACTTTTTAGCAACACGAGCGTCATACCGTTCCGATGGAAATGGAACACCATTACGTGTTGCTATTGTAGTTCTAAAGGGCTTCTGTGTGATGAACTTGTTAAACATACTAAATCGCACGATAAAGCCgacattaaagaatttttagCCAAAGTTCGATCAAAAGTCGAGCTTAAAATCGACGTATCGGATACAAGTTGTGAACTTTGCGATGAAAACTTACAAAATTTAGACAACCTTGTAAATCATCTAGTAACAAAGCATGACTTGAAATACAATAGACAAGTTGAAATGCATATAGAACAATTCAAATTAATAGATCTTAGCTGTCCACTTTGTAAGGAACATTTTACTGAAATGGAAATCCTTAATGCTCATGTTACTTCGCATTCAAACAATTTGCAATGTGAATTGTGCTCTGAAATGTTTAGTAAGAAAAAAGGCTTGAAGTTACATAAGCAACTAGTTCATACATACGATTATAATAAATACGACGAGCAAATCGACATTAAAGAAGAACCAGATGTCATTGAAAGTAAAGTGAAAACATTTGATCCCGACGCAGTAGAAAAGAAAAGGATAGCCAAGCTTAGACGACAGAACATTGCCTGTGTCTTAAACATGTCCACAGCTACACCTTTCAAATACTACATGAATAGGTTTCGTTGTTTCTATTGCTCAAAAAACCATCCAGAATTTGAACCAGTCAAAACTCACACTCTTACTAAACATACTTACTGCGACCCAGAGGGTATAGCTATGAAATCCGTTAAAGGGAAAGATGCTATAGTCAAAGTAGATATAAGCTCCCTTGCTTGCAAGTTATGTTGCATGTCAATTAGCGACCTAGACGCTCTATCCGACCATTTAGTATCAAATCACCATACGAAACACGATAAATTAATGATGGACATAGTCCAACCGTTTAAAATAGCTAAGGATAACATGGCTTGTCCACTTTGCCCAAACGTTGCTTTTAGGTACTTTGTTAAACTCTTAGAACACATGAACGAAAGCCATTCTAATAATAACGTGATATGCGTTTACTGCGGCCAAGCGTTTAGGAGTACGCCATCCTATAGAGGTCATCTAGCGAGGTATCACAGACCGAACTCGTGTAAATGCCCCGACTGCGATTTAGTGTTTCCTAACCCGCCTAAACTTACGACTCATAGAGCAAACGCTCACGGGGCTAAAGCTTTCAAATGCTCCAAATGCAGTGAGAGATTCGCCACTCAGTATCTCAGGCAGAAACACCTTATAGACGCACATGGTTCGGGACACAAATGTTCTTTCTGTGACAGAATGTTCGCTAGGAACTCCTACATGAAAGACCATATCAGGAAACTCCATTTGAAGGAGAAGAATGTGGAATGCTCAGTATATGAAATTGGGCTGAAAAACGTGAAAAGCACCAATTATCGGAAGAGGAGAAATCTACAAATAATATTCAACAACACTTCGATGATACCGTTCAAATGGCGGCAAAAATATCTCTGTTTTTACTGTGGCGAGGACGTTCCCGATTATGATGCGCTTAGGAAGCACACGACAGCACACGGACCGTGCACTTTACGCGACCGCGCGCTCACACGCGTCTCAGGCACAGATGTCGAGATCAAAGTTGATGTGTCCGACATCACATGTCAATTATGCAACGAATCTCCTCCAAATTTCGATGAAATAATCTCCCATTTGATACACAACCACAACTTGCCCTATGACAAACACGCTGATCTCCTCATTATCAAATACCGCCTGGACGATCTCAAATGTTTACTTTGCGAGGAAAGCTTCAATCATTTTAGTAAGCTCATCGTTCACGTTAACAATAGCCATCCTCTAAAAGTCCTCTCGTGTAATGTCTGCCATCAGAAATTTAATAAACAACGGGACTTGACTGCTCACTTCAGATCTTACCATAAAAAGGGAGGTTACACTTGCAACAAGTGCGCTATTTCTTTCCCCACCAACTGGGCGCTTAGTAATCACAAATTTAAGACACACTCGTCGGCttgtaatatatgttttaaaaGCTTCTCTTCGTCCGATAAGCGCCTAAAACATATGAAAACAGAACATGTGGGTGATAGCTTATTGCAATGCGGATTTTGTTTGAAAACTATGAATACAAAACAGGGTTTCTTGCGACATGCGGCCGGCTGCACTTCCGCGAAAGACGATTCCAAATCGCAACATATCATCGACGAAATCGTGTCAATTGACGATACAGAAAGGAGGCCCAGTGTTAAACAGGTTAGGAATAATATCGCTTGTATTCTCAACATGTCCACGGCAATACCGTTCAAACATTTCATGAATAAATTCAGATGTTTCTATTGCTCCAGACATTTCATAGAATGCGACGAACTCAAAGAACATACTATGATCGAGCATCCCCATTGCGATTCTAAGTTTAAATCCATGAAATTACGAAATAGAGAGgacatttcaattaaaatagACATATCGTCGTTATCTTGTAAAATGTGCTTTGAACCTATGAACGATTTGGACCGTTTAATAGATCACCTAACCTCGGAACATAAGGCGCGTTTTGACAAATCTATAGAAATGAATATTCAACCGTTCAGACTAATAAAGGACAACTTCGCGTGCCCTTTTTGCGGGGAAGTGTTTAGGTACTTTAGCACTCTGCTAAGGCACGTTAGTATGGCCCACAcggataataaaaatatatgcatgtACTGCGGAAAGTCCTTTAGGACTAAACCAAATTTACGAGCGCACGTAGCGCGACGTCACAAGGTAGGCAAGATTTACAATTGCGACGCTTGCAAACTAGAGTTTACAAGAACGGTAGATCTGCGTTCGCACATGGGCAGGGTCCATGGCGACAAGACAGTCGACTGTCCTGAGTGCCCGGAGAAATTCGTGTCGCAATACGCGATGCAAAGGCATCTAATTACGATACACGGCTCCGGCCACAAGTGCTCTTACTGCGGAAAATTATTCACCAGAAACTCCTTCATGGACAACCATATCAGACGTACGCATCTCAAAGAGAAAAACGTGCAGTGCTTGCTCTGCAACGACAGATTCTTCGATGCTGCGCTCCTTAAAAACCATATGGTGAAACATATAGGGGAGAGAAACTTTCACTGCGATGTATGCGGTAAGAAGTTTCTATGGAAGAAAAACCTCCGCGGTCACATGGCCTCCCATGTTAAAAACGCTACTCAAGCACTTACCTGA
- Protein Sequence
- MNSGKFDKVKTEENRALIHNLKTCDAIFDTEPEKIHPNTGLMHTHETHKKACETARRQNLETLFSNTSVIPFRWKWNTITCCYCSSKGLLCDELVKHTKSHDKADIKEFLAKVRSKVELKIDVSDTSCELCDENLQNLDNLVNHLVTKHDLKYNRQVEMHIEQFKLIDLSCPLCKEHFTEMEILNAHVTSHSNNLQCELCSEMFSKKKGLKLHKQLVHTYDYNKYDEQIDIKEEPDVIESKVKTFDPDAVEKKRIAKLRRQNIACVLNMSTATPFKYYMNRFRCFYCSKNHPEFEPVKTHTLTKHTYCDPEGIAMKSVKGKDAIVKVDISSLACKLCCMSISDLDALSDHLVSNHHTKHDKLMMDIVQPFKIAKDNMACPLCPNVAFRYFVKLLEHMNESHSNNNVICVYCGQAFRSTPSYRGHLARYHRPNSCKCPDCDLVFPNPPKLTTHRANAHGAKAFKCSKCSERFATQYLRQKHLIDAHGSGHKCSFCDRMFARNSYMKDHIRKLHLKEKNVECSVYEIGLKNVKSTNYRKRRNLQIIFNNTSMIPFKWRQKYLCFYCGEDVPDYDALRKHTTAHGPCTLRDRALTRVSGTDVEIKVDVSDITCQLCNESPPNFDEIISHLIHNHNLPYDKHADLLIIKYRLDDLKCLLCEESFNHFSKLIVHVNNSHPLKVLSCNVCHQKFNKQRDLTAHFRSYHKKGGYTCNKCAISFPTNWALSNHKFKTHSSACNICFKSFSSSDKRLKHMKTEHVGDSLLQCGFCLKTMNTKQGFLRHAAGCTSAKDDSKSQHIIDEIVSIDDTERRPSVKQVRNNIACILNMSTAIPFKHFMNKFRCFYCSRHFIECDELKEHTMIEHPHCDSKFKSMKLRNREDISIKIDISSLSCKMCFEPMNDLDRLIDHLTSEHKARFDKSIEMNIQPFRLIKDNFACPFCGEVFRYFSTLLRHVSMAHTDNKNICMYCGKSFRTKPNLRAHVARRHKVGKIYNCDACKLEFTRTVDLRSHMGRVHGDKTVDCPECPEKFVSQYAMQRHLITIHGSGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCLLCNDRFFDAALLKNHMVKHIGERNFHCDVCGKKFLWKKNLRGHMASHVKNATQALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -