Cpom036676.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066370.1:9695878-9712057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0014 0.11 14.2 0.1 1 23 322 344 322 344 0.97 2 16 0.11 9.1 8.2 3.0 1 23 377 399 377 399 0.95 3 16 1.7e-05 0.0014 20.2 3.1 1 23 404 427 404 427 0.98 4 16 0.025 2.1 10.2 0.2 3 23 434 455 433 455 0.96 5 16 0.025 2.1 10.2 0.2 3 23 496 517 495 517 0.96 6 16 0.025 2.1 10.2 0.2 3 23 558 579 557 579 0.96 7 16 0.025 2.1 10.2 0.2 3 23 620 641 619 641 0.96 8 16 0.025 2.1 10.2 0.2 3 23 682 703 681 703 0.96 9 16 2.7 2.3e+02 3.8 0.0 3 16 728 741 727 743 0.80 10 16 0.048 4 9.3 0.1 2 21 758 777 757 782 0.91 11 16 0.057 4.8 9.1 0.8 3 23 788 809 787 809 0.92 12 16 0.0017 0.14 13.9 1.1 2 23 815 837 815 837 0.97 13 16 0.00013 0.011 17.4 0.2 1 23 863 885 863 885 0.98 14 16 6.4e-05 0.0053 18.4 0.7 1 23 891 913 891 913 0.98 15 16 1.6e-06 0.00013 23.4 0.6 1 23 919 942 919 942 0.98 16 16 1.6e-05 0.0013 20.3 1.4 2 23 950 972 949 973 0.95
Sequence Information
- Coding Sequence
- ATGGATATAACACCAAGTGAATCGTCAAATCGTGATTCTTTGTTGTGCTGTCGCGCCTGCCTGTCTACCGAACGCAGATTATTCAATATCCATGAATGCAAGCTTACTGATGCCTTTTCTCACATTTCGGGGACtcctGTATACCAGGACTATCTCCCGCAGTTCCTCTGCACGTTCTGCCGCGCCTTGCTGATCAAATGTGTTACCTTCAGAGAGATGTGTCTCCGCACACAGCAGACCCTCTTGCCAGAGCTGTACAGGGGAGGGTTGAATGCAGAATATATCCGCAGTATACCCTCCTATAGCATCTACAACCTAACTATAACTCAATTAGAAACTCAACAATACCTAGACACTGTTCTACCTGACGTAGAAATAAAAGTCGAGCCAAACATAGACATAGTAGACATAGATAGTATTATAAAGAACGATCtgaaaatagaagaaaaagtagaagaaattaATGAAGACAAAGAAAAAGATATAGTTTTCGTAAAAGATGTAGAAAtcattaaaaagaaaaagaggaaaaaatcTACAGGTAAGAAAAAGAATGAATCTCAAGATGAAGATGACTATGATGACATAAATGACAGAGATGATGACAGTATTGTCAGTTTAGAAGATAAAAAGAATATAGAAATTGAAGATATCGATGATATAGTGTATGATGATAATGTTAATAGAAAAAATGGTAAATCTAAAGAGAAGAAAAAAGAAAGGAAAGGAAAGAAGGCTATtgcagttaaaaataataaaaaattgaaagtTGTACGCAAATCCAAAGAGGTTACAAAGAAGACAGGAGCGAAATATCCCAGAGACCCGACAAATGATATGCCACTGTTTGATTTTGATAAGTTCGAGAAAACGCATGCAGTACAAATTGTTACTTTGAGTAAGGAGGAGCAGCTGGAAGAGATCACCTCGCGCAAGAAGTCCCGCAATTACCTGGAGTCCCGGTTTCGGTGCGACGACTGCGGGAAAGGCTTCGACGCGGAGGCCGCCTACACCAACCACCTAGTGCGGCATAGTCCAAGCATGGGCCAGCATCCCTGTGAGATCTGTTCCGTTCGCTTCAAGCTGAAGTGCCGACGCCAGCAGCATCAGGACCTTCACCGGCTCAAGTTCCTCTGCAAGGAATGCAGCTTCGTTTCTAGAACAAGGAGCCAAGCAAAAAGACATCACGCCATGCACGCAGGCAAAACCTACGAGTGCCAACACTGCGGGAAGACGTTCAAGATGAGTTCAACGTACCTGACGCACGTGCGGCGCGCGCACGCCGCGCTCAACGTGGCGTGCGACGTGTGCGGAGAGACATTCGTAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCACTCCGAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCATTCCGAGGTACGTATACAGGGTTCACAGGAGTCACCTGACGCACGTGCGGCGCGCGCACGCCGCTCTCAACGTGGCGTGCGACGTGTGCGGAGAGACATTCGTAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCACTCCGAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCACTCCGAGGTACGTATACAGGGTTCACAGGAGTCACCTGACGCACGTGCGGCGCGCGCACGCCGCTCTCAACGTGGCGTGCGACGTGTGCGGAGAGACATTCGTAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCACTCCGAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCACTCCGAGGTACGTATACAGGGTTCACAGGAGTCACCTGACGCACGTGCGGCGCGCGCACGCCGCTCTCAACGTGGCGTGCGACGTGTGCGGAGAGACATTCGTAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCACTCCGAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCACTCCGAGGTACGTATACAGGGTTCACAGGAGTCACCTGACGCACGTGCGGCGCGCGCACGCCGCTCTCAACGTGGCGTGTGACGTGTGCGGGGAGACATTCGTAGGGGACAAAGGGCTCAAGCTACACAAGAAACGAACGCACGCCGAGGTACGTATACAGGGTTCACAGGAGTCACCTGACGCACGTGCGGCGCGCGTCGCGCTGGACGTAGCGTGTGACGTGTGCGGGGAGACATTCATCGGCGAGAAGGGGCTCAAGCTAGACAAGAATAGAAAGCACTCCGAGAACATGCCACTAAGGCTCAAATGCAGTATCTGCTCAGCTAACTTCTATAGCGTAGAGGCGCTgaacagacacacagacacGGCCGCCGAGCACGGCGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGACGCGCTACACAAGCATGTGGGGAAGATGCATCCGTCTGAATTACGTCGGTGTGAAGAGTGCGGGATGACGTTTCCCTCTGCGGCCTCCTATGATACCCACCACCGACGCAAACACCTCCAGCGCTACAAGGACGGGCGGAATGTTCCCCGCAAACGTCGTGTTCCTCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGCCGTATACTACCGAACGCGACGCTGCTGCGTTACCACCAGCGCACGCACCAGGACGTGAAGCCGTACGCCTGCACCGAGTGCCCGAAAACCTTCGCTTTGAAATCCTCCTTAAACTTCCACATGAGGTCACACACCGGTGAGAGGCCGTTCCAGTGCCCGCTGTGCCCGCTCGCCTTCACCGTGAAGGCCAACCTCAACAGACACCACAGAACAGCGCACCTGAAGCTGCACCCCCGCATCCCGTGCTCGATCTGCGGCCGCGTGTTCACCACCAACTCGTGCGTGCGCGTGCACATCAACACCGTGCACCACGGCCAGCCCGGGCCCAAGCGGGACCGGCGCAAGCGCAAGAAACCGGACTCGCCCTGTACCATATCTAGTCTgacacaataa
- Protein Sequence
- MDITPSESSNRDSLLCCRACLSTERRLFNIHECKLTDAFSHISGTPVYQDYLPQFLCTFCRALLIKCVTFREMCLRTQQTLLPELYRGGLNAEYIRSIPSYSIYNLTITQLETQQYLDTVLPDVEIKVEPNIDIVDIDSIIKNDLKIEEKVEEINEDKEKDIVFVKDVEIIKKKKRKKSTGKKKNESQDEDDYDDINDRDDDSIVSLEDKKNIEIEDIDDIVYDDNVNRKNGKSKEKKKERKGKKAIAVKNNKKLKVVRKSKEVTKKTGAKYPRDPTNDMPLFDFDKFEKTHAVQIVTLSKEEQLEEITSRKKSRNYLESRFRCDDCGKGFDAEAAYTNHLVRHSPSMGQHPCEICSVRFKLKCRRQQHQDLHRLKFLCKECSFVSRTRSQAKRHHAMHAGKTYECQHCGKTFKMSSTYLTHVRRAHAALNVACDVCGETFVGDKGLKLHKKRTHSEGTKGSSYTRNERIPRYVYRVHRSHLTHVRRAHAALNVACDVCGETFVGDKGLKLHKKRTHSEGTKGSSYTRNERTPRYVYRVHRSHLTHVRRAHAALNVACDVCGETFVGDKGLKLHKKRTHSEGTKGSSYTRNERTPRYVYRVHRSHLTHVRRAHAALNVACDVCGETFVGDKGLKLHKKRTHSEGTKGSSYTRNERTPRYVYRVHRSHLTHVRRAHAALNVACDVCGETFVGDKGLKLHKKRTHAEVRIQGSQESPDARAARVALDVACDVCGETFIGEKGLKLDKNRKHSENMPLRLKCSICSANFYSVEALNRHTDTAAEHGDLRPCEQCGENCASEDALHKHVGKMHPSELRRCEECGMTFPSAASYDTHHRRKHLQRYKDGRNVPRKRRVPRAPPPRGQFVCEQCGRILPNATLLRYHQRTHQDVKPYACTECPKTFALKSSLNFHMRSHTGERPFQCPLCPLAFTVKANLNRHHRTAHLKLHPRIPCSICGRVFTTNSCVRVHINTVHHGQPGPKRDRRKRKKPDSPCTISSLTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -