Cpom028542.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066362.1:618407-624633[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.16 14 7.7 3.9 1 23 114 136 114 136 0.96 2 18 0.00021 0.018 16.7 1.3 2 23 143 165 142 165 0.92 3 18 4.8e-06 0.0004 21.9 4.8 1 23 171 193 171 193 0.96 4 18 2.9e-06 0.00024 22.6 3.3 1 23 199 221 199 221 0.99 5 18 0.0014 0.12 14.2 0.4 1 23 227 249 227 249 0.98 6 18 0.00034 0.028 16.1 0.0 3 23 257 277 256 277 0.96 7 18 0.0018 0.15 13.8 2.1 1 23 283 306 283 306 0.95 8 18 3.8 3.1e+02 3.4 0.1 6 23 355 372 351 372 0.76 9 18 4.6e-05 0.0038 18.8 4.5 1 23 378 400 378 400 0.98 10 18 0.0058 0.48 12.2 0.0 1 23 406 428 406 428 0.98 11 18 0.00045 0.037 15.7 1.6 1 23 433 455 433 455 0.95 12 18 0.00092 0.076 14.7 2.1 6 23 465 482 463 482 0.97 13 18 0.0022 0.18 13.5 0.6 2 23 688 710 688 710 0.96 14 18 0.00077 0.064 15.0 0.1 1 23 716 738 716 738 0.93 15 18 0.5 42 6.1 0.1 2 23 745 766 744 766 0.95 16 18 0.0016 0.13 14.0 0.3 1 23 774 796 774 796 0.97 17 18 0.0012 0.099 14.4 0.5 5 23 805 823 802 823 0.96 18 18 0.0026 0.22 13.3 1.0 1 23 828 853 828 854 0.93
Sequence Information
- Coding Sequence
- ATGACTGAAGACAGTCGCGATCCCGGTGTTAACGGCCAGGCTGATGATGACCGAGCCTCCAGCGACGAGGACGACCGCCCGCTCGCCGCCCTGGCTTCCGAGAAAGCTGACGCCTACACAAACTTCTACAACGCCTTGTTAAACTTTAGAAACCACTTCCTAAACGAACATGACGCCCGCTACCCAGAATATACAGAGTCGAGCGAAAGCGAAGCGGAGGCGAACGGGTCAGATGATTTCGACGACTTGTCCAAGAATAATATGCGACGGGATCGCATGGATGAAGCCACGAGACTCGAATTAGCGAGCGCCCAGACCCGCATAGACGGCAAGACTTACTACACGTGTCGCATATGCGGCAAACATCTCAGCTCCCCGCATACCTACGTGTTTCACACGCGCATACACACGGGCGAGCGGCCGTGCGTATGCCACATATGCGGGAAGCAGTTCAGAGCGCCGAACGGCTTGCAGAGGCATCTCGCGGAGACCCACGAGCGGCGCCGCCGGCACGCGTGTCGACACTGCGATCGGACGTTCGCCAACTCCCAGAACCTGAAACAGCACATCAGGACGCACACGGGGGAGAGACCGTACTCGTGTACGCTCTGCGGGAAGCGTTTTCGGCAGTCGGGGTCGCTGCACGCGCACAGGAAGACGCATATAGCGCTGCTGCCGTTCCGCTGCGCGCACTGTCCGGCGGCGTTCCGGCTGCGCGCCGGGCTGGCGCGGCACCGGCTGCGGCACTCCGGCGAGCGGCCGCACGGCTGCGAGCTCTGCGGCCGCGCCTTCCGCACGCGCGCCGACCTGGCGGCGCACCGCGCGGCGCACTCGCCGGCGCGCGCCCACGCCTGCCCGCTGTGCCGCGCCGCCTTCCGCTCGCGCCGCGCCCTGCGCCACCACGCGCGCCGTCTGCACCCGCCGCCCGACCCGCTACTACAGGACGATATGGCTAACCGATCATACTTCGTTCTAGCACCTCTAGATGCGGCGcaaaaaaacgaaaacactcGAACAGAAAAATCAGCGGTCGCtacgcggcggcggcggcactGCTCCGCCTGCGGGCTCGGCGTCGCCGCCGGCAACCTGGCCAGACACGTCCGCACCGCTCACGCGCAGACACGCCCGCATACGTGTCAACAGTGCCCCGCCACCTTCTCTAGAAGAGACCATCTCAAAGACCACGAGCGCACGCATGGAAATACCCGCGAATATGTCTGCGACACCTGCGGGGCCCCCTCGCGCTCGGCGGCAGCCCTGCGTATGCACAAACAAAGCCACGGACATCGCCTACACGCCTGTTTGCACTGCGAGGCACGATTCCGTCGCAAAGCGGAGCTTACCGCGCATCTGTCGGTGCATACTGGAGAACGCGCGCATGTGTGTCGGTGCGGCAAGACCTTCCGACTGCGCGCGCAGCTCACGCGCCACGAGCGCACGCACCGGGGCCCGCCGCGCTACCGGCGTTGCGAGTTCTGCCCCCTCGTGGTCGCCGGCGCCCTCTACACCAGCCACCTGCTGGGCCGCCATGCCGACCTGGTGTTCCACTGCGACGAGTGCAGCTCGTACATCGCCCGGAGACAGTTCCTCGCGCACATGACCCGGCACGCGCACCAGTACGACGCGGCAGAGCGCCGCGCGGCCCCCGCGCCGCCGTACTCgccgcccgcccccgcccccgccgcccccgcccccgcccgcACCCCCGCCCCCACCACCaccaccgccgccgccgactCCACCACCACCTCCTCCGGCGGGCTCagcgacgacgacgacgacgacgacctTGAACAGATGCCACACCAGCTCGAGGCGATTGAGCGCGAACGTGACAATCCTGATCCGGTTCGGGAAAATGCAGCGCCCGAGCCGAATGCAGCCGCTCGACCGATTGTGATAGCCGAGCCGAACCCTGAACCCGTTCAATCGAGAGCCGTGTGGATCGATGTTCCTGTTGAAAATCCTGTGCCCGCTCAACTACATCAGCGGGCCGAGTCGACTGCGCAGGTCGAAGAGACGAATGAGCCTCAGCCCAAGAAGACGCCGGCCGTCCGCCAGTGCCCCCTCTGCCCCAAGACCTACACGGCCTCCTCGAGCTACTTCTACCATCTCAAGTACACGCACGGCCAGAGCCGCGAGCACGAGTGCCCGACCTGCGGCCGCCGCTTCGGCACGCGCGGCGCGCTGCGCGGGCACGCCGCCCTGCACGAGCCCGGCCGGGGCTGGCCGTGCGACCAGTGCGGGAAACTGTCCCGTACCCAAGCCGGCCAGTATATACACGCGCAGACGCATAAGGGTGAGAAAGTGAAGAAATTCGTGTGCGCGGAGTGTGGCCGAGCGTTCCGCTGGCGCACGGAATTCAAACGCCACGTCGCCAGACATGCGGCGAATCGTACGCACGCGTGCGAATGCGGTCGTGCGTTTTCAGTGCGGGCGGATTTGTTAAGACACGCTCGCACGCACAGGCGCGCTGCGCACCCGTGTCCGCACGCGGGCTGCGGCGCGACGTTCGCGCAGCCGCGCTACCTGCGCGCGCACGAGGCGCGCAAGCACCACGCCGCGCCCGGCAAGGCGCAGGCGCAGCGCAAGTCTGCTTAA
- Protein Sequence
- MTEDSRDPGVNGQADDDRASSDEDDRPLAALASEKADAYTNFYNALLNFRNHFLNEHDARYPEYTESSESEAEANGSDDFDDLSKNNMRRDRMDEATRLELASAQTRIDGKTYYTCRICGKHLSSPHTYVFHTRIHTGERPCVCHICGKQFRAPNGLQRHLAETHERRRRHACRHCDRTFANSQNLKQHIRTHTGERPYSCTLCGKRFRQSGSLHAHRKTHIALLPFRCAHCPAAFRLRAGLARHRLRHSGERPHGCELCGRAFRTRADLAAHRAAHSPARAHACPLCRAAFRSRRALRHHARRLHPPPDPLLQDDMANRSYFVLAPLDAAQKNENTRTEKSAVATRRRRHCSACGLGVAAGNLARHVRTAHAQTRPHTCQQCPATFSRRDHLKDHERTHGNTREYVCDTCGAPSRSAAALRMHKQSHGHRLHACLHCEARFRRKAELTAHLSVHTGERAHVCRCGKTFRLRAQLTRHERTHRGPPRYRRCEFCPLVVAGALYTSHLLGRHADLVFHCDECSSYIARRQFLAHMTRHAHQYDAAERRAAPAPPYSPPAPAPAAPAPARTPAPTTTTAAADSTTTSSGGLSDDDDDDDLEQMPHQLEAIERERDNPDPVRENAAPEPNAAARPIVIAEPNPEPVQSRAVWIDVPVENPVPAQLHQRAESTAQVEETNEPQPKKTPAVRQCPLCPKTYTASSSYFYHLKYTHGQSREHECPTCGRRFGTRGALRGHAALHEPGRGWPCDQCGKLSRTQAGQYIHAQTHKGEKVKKFVCAECGRAFRWRTEFKRHVARHAANRTHACECGRAFSVRADLLRHARTHRRAAHPCPHAGCGATFAQPRYLRAHEARKHHAAPGKAQAQRKSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -