Cpom034628.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066368.1:5296533-5309642[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1e-06 0.00018 23.0 1.2 1 23 257 279 257 279 0.97 2 13 0.00028 0.023 16.4 4.1 1 23 285 307 285 307 0.98 3 13 1.3e-05 0.0011 20.5 2.7 1 23 313 335 313 335 0.95 4 13 0.0017 0.14 13.9 0.8 1 23 341 363 341 363 0.98 5 13 6.9e-05 0.0057 18.3 3.2 1 23 369 391 369 391 0.98 6 13 0.00037 0.031 16.0 2.9 1 23 424 446 424 446 0.97 7 13 0.00019 0.016 16.9 1.0 1 23 452 474 452 474 0.92 8 13 3.1e-06 0.00026 22.5 0.9 1 23 480 502 480 502 0.99 9 13 2.7e-06 0.00022 22.7 3.5 1 23 508 530 508 530 0.96 10 13 0.0007 0.058 15.1 2.9 1 23 536 559 536 559 0.95 11 13 9.2e-05 0.0076 17.9 0.3 3 23 569 589 567 589 0.98 12 13 0.00022 0.018 16.7 1.4 1 23 603 625 603 625 0.98 13 13 1.2e-06 9.8e-05 23.8 2.9 1 23 631 653 631 653 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAGTATTATTCATGTAGCTGCTGCCTGGTGCGCCCACCAGACAAAGGCCTCAAGACTATGTATAAACATCTCGGCAAAGCAGAGGTATATTACGACATGCTGAGAGAATGCTTTGGTTTAAGTTTAAGCTTAGGAAATGATGAGTGTGGTATCTGCGAGGTGTGCGTGGTGCGACTGCGGGACGCGAACGACTTCAAGCAGCAAGTGCTGCGCGTCCAGGACGTCCTGCACGCGCGGCTCACGGGAGCACTCCCTGCCAAGCAACAATCGTCCGTTCCCGAGCGAGCTTGGAACACTGTACCAGGAAACACCATCGAGTCCCGCGTCGGCATGCTGGACGAAAGCAGAACGGAACTGGACCAACTGAAGAAATTAGTTGATGACGTTATTATGGACTCTACGAGGAACGAGCATTGGGTTACACGCCCGAACATCGAAATCAATAGTGTACCGGAAGTGAAGGCTGCAGATGTCAACTACAAAATCAAGTTAGAGAAACCAACTGGATGTGACACCATTTCGCCTGCAGATGTCAACTACAAAATCAAGTTAGAGAAACCTACTGGATGTGACGCCATTTCGGGCGGGATCAAGCAGGAGAGTCCAGAGGTGGAGATGGCTGATAGCAACATCATATCAGTAACATTATACGAAGAATCACCAGCGTCTTTTGCTCAACCAGTTCCTACCGCGTCCCACAGCGTCTTGTTCGCGCCAGCTCTGAACGTAGTCAAACGCCGCTCGCAAACTGGAGAGAAACCTTACGCGTGCAAAATATGCGACAAAACATTCGGACAGAAGGGCCACTTAAATGCTCATTACGCAAAACATATaggaaaattcaaattctctTGTGAATTATGCAAAAGGGGattcgtacacaaacatgaatATGTTACTCATATGCGGATACACACTGGAGAGAAACCTTTTGCGTGCAACATATGCGACAAAAAATTTCGACAAAAGGGCCACTTTAATGCTCATTACGCATACCATATaggaaaattcaaattctctTGCGAATTATGCAAAAGGGGATTCGTAAAGAAACTCGACTATGATAGTCATATGCGGATACATACTGGTGAAAAACCATATGAATGTGATAAATGCAACAAGAAATATAGGTATAAAGGCCaattaaaactacataaaaaTAGTCATTTGAAATATGATCAGAATCGCGTAGAGCCAGGAGAAATAACTACATGCAAAAGAGAGTCATCAGAAGACTCAGATGATCAAGGaccttcaaaatattttacgtGTGATATATGCAAAAAGCAATTTGtgaataaaaactatttagcCGCTCATTCGAAACATCACTCTGGGGATTATCCATTCACTTGCGACATTTGTAAAAGGAAATTTAATACGCAGTTTGCCTTAAATGCTCATAAAGTTGATCACTCGGGAGGAAGACCTTTTAAATGTGATAAATGCAATAGGGGCTACACAACGAAAGGTGCTTTAACTCTACATATGAAAGTTCACACTGAGGATTATAAGCATGCATGTCATCTGTGCAGTAAACGATTCATAACAAAGGAGAATTTAAATGTACATATGCGCGTACACACGGGGGAAAAGCCTTATACCTGTGTAACTTGTGAAACTAAGTTCCGCTATCGATATAGCTTGAAGAAACATTTATTGGAGAAACACAACCAAGTTATAGACAAACAGTTCGGTTGTGATACTTGTGGGGAACGATTTGCATTACAGGAGACGTTAATAAAACATATGAACAAACACACTGAGAAGGAAATGGAAGATAAAAAGAAAGGCCTAGCATTTATGTGTGAAATATGTAGCAAACGATTTTCGACAAAAGGTATTCTAAAAACCCATAGAGAAACACATAATGAAGAAAGACCTTACGAGTGTGAagtatgtcataaaaaataccGAACGAAGACGAATTTACAGGATCACATGCAGGTGCAcgaggaaaaaaaaacactcttgTGA
- Protein Sequence
- MEEYYSCSCCLVRPPDKGLKTMYKHLGKAEVYYDMLRECFGLSLSLGNDECGICEVCVVRLRDANDFKQQVLRVQDVLHARLTGALPAKQQSSVPERAWNTVPGNTIESRVGMLDESRTELDQLKKLVDDVIMDSTRNEHWVTRPNIEINSVPEVKAADVNYKIKLEKPTGCDTISPADVNYKIKLEKPTGCDAISGGIKQESPEVEMADSNIISVTLYEESPASFAQPVPTASHSVLFAPALNVVKRRSQTGEKPYACKICDKTFGQKGHLNAHYAKHIGKFKFSCELCKRGFVHKHEYVTHMRIHTGEKPFACNICDKKFRQKGHFNAHYAYHIGKFKFSCELCKRGFVKKLDYDSHMRIHTGEKPYECDKCNKKYRYKGQLKLHKNSHLKYDQNRVEPGEITTCKRESSEDSDDQGPSKYFTCDICKKQFVNKNYLAAHSKHHSGDYPFTCDICKRKFNTQFALNAHKVDHSGGRPFKCDKCNRGYTTKGALTLHMKVHTEDYKHACHLCSKRFITKENLNVHMRVHTGEKPYTCVTCETKFRYRYSLKKHLLEKHNQVIDKQFGCDTCGERFALQETLIKHMNKHTEKEMEDKKKGLAFMCEICSKRFSTKGILKTHRETHNEERPYECEVCHKKYRTKTNLQDHMQVHEEKKTLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -