Cpom014998.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066351.1:22555948-22559230[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 8.8e-05 0.0074 17.9 0.1 3 23 3 23 3 23 0.99 2 27 0.00013 0.011 17.4 0.4 1 23 29 51 29 51 0.97 3 27 4.2 3.5e+02 3.2 0.9 11 23 60 72 57 72 0.88 4 27 0.00013 0.011 17.4 0.4 1 23 78 100 78 100 0.97 5 27 4.2 3.5e+02 3.2 0.9 11 23 109 121 106 121 0.88 6 27 0.00013 0.011 17.4 0.4 1 23 127 149 127 149 0.97 7 27 4.2 3.5e+02 3.2 0.9 11 23 158 170 155 170 0.88 8 27 0.00013 0.011 17.4 0.4 1 23 176 198 176 198 0.97 9 27 4.2 3.5e+02 3.2 0.9 11 23 207 219 204 219 0.88 10 27 0.00013 0.011 17.4 0.4 1 23 225 247 225 247 0.97 11 27 4.2 3.5e+02 3.2 0.9 11 23 256 268 253 268 0.88 12 27 0.00013 0.011 17.4 0.4 1 23 274 296 274 296 0.97 13 27 4.2 3.5e+02 3.2 0.9 11 23 305 317 302 317 0.88 14 27 0.00013 0.011 17.4 0.4 1 23 323 345 323 345 0.97 15 27 4.2 3.5e+02 3.2 0.9 11 23 354 366 351 366 0.88 16 27 0.00013 0.011 17.4 0.4 1 23 372 394 372 394 0.97 17 27 4.2 3.5e+02 3.2 0.9 11 23 403 415 400 415 0.88 18 27 0.00013 0.011 17.4 0.4 1 23 421 443 421 443 0.97 19 27 4.2 3.5e+02 3.2 0.9 11 23 452 464 449 464 0.88 20 27 0.00013 0.011 17.4 0.4 1 23 470 492 470 492 0.97 21 27 4.2 3.5e+02 3.2 0.9 11 23 501 513 498 513 0.88 22 27 0.00013 0.011 17.4 0.4 1 23 519 541 519 541 0.97 23 27 4.2 3.5e+02 3.2 0.9 11 23 550 562 547 562 0.88 24 27 0.00013 0.011 17.4 0.4 1 23 568 590 568 590 0.97 25 27 0.00036 0.03 16.0 6.1 1 23 596 618 596 618 0.98 26 27 0.00069 0.057 15.1 3.0 1 23 629 651 629 651 0.98 27 27 0.0091 0.76 11.6 1.1 1 23 656 679 656 679 0.96
Sequence Information
- Coding Sequence
- ATGGGGTGCCCGACGTGCGGGCGCGTGCTGGCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGGTAATACCGCACATACACTACCGTCGCGCTCGGCGCTGCTGCGCCACGCGCGCACGCACTCCGGCGAGCGGCCCTTCGCGTGCCCGCGCTGCCAGCGCCGCTTCGCGCAGAAGGAGGTCATGCAGCGACACATGCTGGTCCACGAAGCGGTGCGTCCACACAAGTGCTCAACGTGCAACAAGAGCTTCACTCAACGCAACGCTTTGCATCTCCACGAGCGCTCACACCTCCCCCCGCACGAGAGAGCGCTGGCGCTGCACAGCTGCCCTCACTGTCCTAAACTCTTCCTTTATTCTTCAGGTCTTTCACGCCACATGATGACTCACTCAGGCCGCGTGTACGTCTGCGGCGCTTGCCGACGACAGTTCGCAGACAAAAGTTCAGTTCTGCGTCACCACAGAGCCCGGCACGCGCATCTAGAGGAACCCGACGAACCCGAGTGCGTAGAAACAGAAAACCCGCCCACAGAAGATGATAATACATAG
- Protein Sequence
- MGCPTCGRVLASRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEGNTAHTLPSRSALLRHARTHSGERPFACPRCQRRFAQKEVMQRHMLVHEAVRPHKCSTCNKSFTQRNALHLHERSHLPPHERALALHSCPHCPKLFLYSSGLSRHMMTHSGRVYVCGACRRQFADKSSVLRHHRARHAHLEEPDEPECVETENPPTEDDNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -