Basic Information

Insect: Cydia pomonella
Gene Symbol: -
Assembly: GCA_033807575.1
Location: CM066368.1:5342089-5348561[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.7e-06 0.00039 22.0 1.7 1 23 167 189 167 189 0.96

2 14 3.2e-05 0.0027 19.3 1.6 1 23 195 217 195 217 0.98

3 14 4.5e-07 3.8e-05 25.1 1.7 1 23 223 245 223 245 0.98

4 14 0.0013 0.11 14.3 2.8 1 23 278 300 278 300 0.97

5 14 0.00071 0.059 15.1 2.5 1 23 306 328 306 328 0.93

6 14 1.1e-05 0.0009 20.8 1.9 1 23 334 356 334 356 0.94

7 14 6.1e-06 0.00051 21.6 3.7 1 23 362 384 362 384 0.98

8 14 0.0084 0.7 11.7 6.1 1 23 390 413 390 413 0.95

9 14 2e-06 0.00017 23.1 0.8 1 23 421 443 421 443 0.98

10 14 0.003 0.25 13.1 0.8 1 23 457 479 457 479 0.96

11 14 4.4e-05 0.0037 18.9 3.0 1 23 485 507 485 507 0.98

12 14 3.8e-06 0.00031 22.2 3.1 1 23 512 535 512 535 0.97

13 14 6.2e-05 0.0051 18.4 0.2 1 23 541 563 541 563 0.97

14 14 0.0014 0.12 14.1 1.1 1 23 569 592 569 593 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.7e-06	0.00039	22.0	1.7	1	23	167	189	167	189	0.96
2	14	3.2e-05	0.0027	19.3	1.6	1	23	195	217	195	217	0.98
3	14	4.5e-07	3.8e-05	25.1	1.7	1	23	223	245	223	245	0.98
4	14	0.0013	0.11	14.3	2.8	1	23	278	300	278	300	0.97
5	14	0.00071	0.059	15.1	2.5	1	23	306	328	306	328	0.93
6	14	1.1e-05	0.0009	20.8	1.9	1	23	334	356	334	356	0.94
7	14	6.1e-06	0.00051	21.6	3.7	1	23	362	384	362	384	0.98
8	14	0.0084	0.7	11.7	6.1	1	23	390	413	390	413	0.95
9	14	2e-06	0.00017	23.1	0.8	1	23	421	443	421	443	0.98
10	14	0.003	0.25	13.1	0.8	1	23	457	479	457	479	0.96
11	14	4.4e-05	0.0037	18.9	3.0	1	23	485	507	485	507	0.98
12	14	3.8e-06	0.00031	22.2	3.1	1	23	512	535	512	535	0.97
13	14	6.2e-05	0.0051	18.4	0.2	1	23	541	563	541	563	0.97
14	14	0.0014	0.12	14.1	1.1	1	23	569	592	569	593	0.94

Sequence Information

Coding Sequence: ATGGAGGAGTATTACTCGTGTAGCTGCTGCCTGGTGCGCCCTCCGGATAAAGGCCTCAAGACACTATACAATCATCTCGGCAAAGCAGAGATATATTATGACATGCTGAGAGAATGCTTCGGTTTAAATCTAAGTTTAGGAAATTACGAGTGCGGAATCTGCGAGGTGTGCGTGGGGCGGCTGCGGGACGCGAACGACTTCAAGCTGCAAGTGCTGCGCGTCCAGGACGTGCTGCACGCGCGGCTGACGGGAGCACTCCCTGCCACTGCAGATGACAAGATCAAAATCAAGTTAGAGAAACCAACTGGAGATGACGCCATTTCGCGCGGGATCAAGCAGGAGAGGCCAGAGGCGGAGATGGCTGATAGCAACAACGTATCAGTTGCATTACACGAAAGATCGGCAGCGCCCGTTCCTACCGCATCCCACAGCATGCACTGGCGTGACCGGCCAGCTCCGAACGTTACCAAGCGCCGCTCCCATACTGGAGAGAAACCTTATGCGTGCAACATATGCGACAAAAGATTCGTACAGAAGGGTCATTTAAATACTCATTACGCATACCACATGGGAAAGTTTAAATTTTCCTGCGAATTATGCAAAAGGGGTTTCGTACAAAAATTTGAATATACTACTCATATGCGGATACACACTGGTGAAAAACCATACGAATGTGATATATGCAACAAAAAATTTAGACAAAAGGGcaacttaaaaatacataaaaatagtcATTTGAAATATGATCAGAATCGCGTAGAGCCAGGAGAAATAACTGCATGCAAGAAAGAGTCGTCAGAAGAATCAGAAGATCAAGTGCCCGCAACATATTTTACGTGCGATATATGCAAAAAGCAATTTGTGGATAAAAACTATTTAGATGCTCATTCAAAACATCACTCTGGGGATTATCCTTTCTCTTGCGACATTTGTAAAAGAAGATTTAATACGCAGTTTGCCTTGAATACTCATAAATTTGATCACTCGGGAGGGAAACCTTTTAAATGTGATAAATGCAATAAAAGTTATAGAACAAAAAGCGCTTTAAATACTCATTCGTTGGCTCACACAGAGGGTTATAAACACGAGTGTCACTTGTGTAATAAACGATTCATAGTAAAGCAGAATTTGAATATACATATGCGCGTACACACCGGAGAAAAACCTTACACCTGTGCAACATGTGAAACTAAGTTTCGCTCTAGACATTGCTTACAAAAGCATTTATTAGAGAAACACAATCAAGTTATAGACAAACAGTTCAGTTGTGATACTTGTGGTAAACGATTTGCACTACAGGGGACTTTAGAGAAACATATGAACAAACACACTGAGAAGGAAACTGGAGATAAAAAGAAAGAACTAGCATTTATGTGTGAAATATGTAGCAAACGATTTTCAACAATAAGTATACTTaaataccatagagaaatacaCAATGAAGAAAGACCTTTCGAGTGCGAAGTATGTCATAAAAAGTTTCAAACGAAGAGGAGTTTACAGGACCACGTGAAGGTGCACGAAGACAAAAAACACTCGTGTGAAGTATGCGGCCAGCAATTCAGACATAAGTCCGCTTTGAAAGTTCATATCAGACGGATGCACTCCGAAAACAGACCGCATGTTTGCGATGTTTGTAAAAAGGCTTTTGCAGTTCTCGCTGAACTAAAAATTCATTATCGGGTACACACTGGGGAGAAACCATATGCATGCGAAATATGCTCTAAGAAATTTCAACGCCTGAGTGGGATTAAGAAACATCTTATAAATGTCCACCACGAGAAACCTACGAGAtttgttaaattaaaagaattgaataaatatgactaa
Protein Sequence: MEEYYSCSCCLVRPPDKGLKTLYNHLGKAEIYYDMLRECFGLNLSLGNYECGICEVCVGRLRDANDFKLQVLRVQDVLHARLTGALPATADDKIKIKLEKPTGDDAISRGIKQERPEAEMADSNNVSVALHERSAAPVPTASHSMHWRDRPAPNVTKRRSHTGEKPYACNICDKRFVQKGHLNTHYAYHMGKFKFSCELCKRGFVQKFEYTTHMRIHTGEKPYECDICNKKFRQKGNLKIHKNSHLKYDQNRVEPGEITACKKESSEESEDQVPATYFTCDICKKQFVDKNYLDAHSKHHSGDYPFSCDICKRRFNTQFALNTHKFDHSGGKPFKCDKCNKSYRTKSALNTHSLAHTEGYKHECHLCNKRFIVKQNLNIHMRVHTGEKPYTCATCETKFRSRHCLQKHLLEKHNQVIDKQFSCDTCGKRFALQGTLEKHMNKHTEKETGDKKKELAFMCEICSKRFSTISILKYHREIHNEERPFECEVCHKKFQTKRSLQDHVKVHEDKKHSCEVCGQQFRHKSALKVHIRRMHSENRPHVCDVCKKAFAVLAELKIHYRVHTGEKPYACEICSKKFQRLSGIKKHLINVHHEKPTRFVKLKELNKYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410540;
90% Identity: -
80% Identity: -