Cpom016964.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia pomonella
Gene Symbol
-
Assembly
GCA_033807575.1
Location
CM066353.1:7644348-7669848[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00028 0.023 16.4 1.5 1 23 408 430 408 430 0.96
2 28 0.014 1.1 11.1 0.6 1 20 436 455 436 458 0.94
3 28 9.6e-05 0.008 17.8 4.6 1 23 477 499 477 499 0.98
4 28 0.00061 0.051 15.3 4.7 1 23 505 527 505 527 0.99
5 28 0.00012 0.01 17.5 5.3 1 23 533 555 533 555 0.97
6 28 2.6e-05 0.0022 19.6 7.1 1 23 561 583 561 583 0.97
7 28 2.3e-06 0.00019 22.9 2.9 1 23 589 611 589 611 0.97
8 28 0.00033 0.028 16.1 6.7 1 23 617 639 617 639 0.97
9 28 6.3e-05 0.0053 18.4 6.4 1 23 645 667 645 667 0.98
10 28 1.6e-06 0.00013 23.4 1.9 1 23 673 695 673 695 0.98
11 28 0.00016 0.013 17.1 7.9 1 23 701 723 701 723 0.98
12 28 0.00013 0.011 17.4 2.0 1 20 729 748 729 749 0.95
13 28 0.0014 0.11 14.2 1.9 6 23 750 767 749 767 0.98
14 28 0.00074 0.062 15.0 2.3 2 20 822 840 821 842 0.92
15 28 0.048 4 9.3 5.4 3 23 875 895 872 895 0.93
16 28 0.00031 0.026 16.2 2.6 1 19 901 919 901 921 0.95
17 28 0.0015 0.13 14.1 2.2 6 23 922 939 920 939 0.97
18 28 0.00031 0.026 16.2 2.6 1 19 945 963 945 965 0.95
19 28 0.0015 0.13 14.1 2.2 6 23 966 983 964 983 0.97
20 28 8.2e-05 0.0068 18.0 6.4 1 23 989 1011 989 1011 0.98
21 28 4.2e-05 0.0035 18.9 5.4 1 23 1017 1039 1017 1039 0.98
22 28 2.5e-05 0.0021 19.7 6.0 1 23 1045 1067 1045 1067 0.97
23 28 7.1e-05 0.0059 18.2 7.1 1 23 1073 1095 1073 1095 0.97
24 28 9.9e-06 0.00083 20.9 6.0 1 23 1101 1123 1101 1123 0.98
25 28 0.00044 0.037 15.7 10.0 1 23 1129 1151 1129 1151 0.97
26 28 4.4e-06 0.00036 22.0 4.0 1 23 1157 1179 1157 1179 0.97
27 28 0.0024 0.2 13.4 0.3 1 23 1186 1208 1186 1208 0.96
28 28 0.23 19 7.2 6.1 1 23 1218 1240 1218 1240 0.99

Sequence Information

Coding Sequence
ATGAATACGGAGCATCACAATATCAACACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGcagcagcagcagacGGTGAATTTGACCCCTACGACGTCCGCTACCGACCTGCGAGTGAACTCTGCCGCAGTAAACGTCGCTTTGTCTAGCGTCGCGAAGTACTGGGTGTTTACAAATCTCTTCCCGGGACCGATACCGCAAGTGTCGGTGTACGGTTTGCCCACGGGTACGAGGATAGAAAATGGGAAACCAGTGCAGgaCCTTGGTCAAGCCCATGCAAGCATACTCAATGGAGATCCCAACATTATACTTGGCCATCCAGGACAGACCCAAGTTACTGTCTCCGCTGCACAACAGTTACCACAGATCATTGCCACTCAGACACAAACACATGatgCCCTAGCCCATGCTCAGCAACAAGAGCTGTCCCAGCAGCAGGCCACTGGTCAGGTCACAACTAACTCGGGTCAAACCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACACCATAACATTGATATGGTAAATCACGTGggGCATCACTCGCAGCAACACATAATGCAGCAGCAGCTAATGGCAGCAACGAGGCCAGAACACTCCAACCAGCagATCCAGCTAACAGTGAGCGAAGACGGCATCGTCACCGTAGTAGACCCGGGCGGAGGCAAGCTCGTGGACAAGGAGGAGCTGCATGAGGCTATCAAGATGCCGTCAGACCAGCACACACTCACTGTGCACCAGCTCCAGCAGATTGTGGGGCAACAGGTGTTAGAGAACGTAGTCCGCATCGAGCAAGCTACCGGCGAGCCAGCCAACATTCTCGTCACGCAGAACCCCGACGGCACCACGTCCATAGAAGCCAGTGCCGCGGACCCCCTGTCCATAGTCAAAGATGAAAAGTGCGGCTCCAAGATAGAGACTGCCCACTTCGCGCTGCCAGCTGAGATAAAGGACCTTAAGAGCATTGATTTAAAGAGTGTGGGCGCGATGGGTATGGAAGGAGCCGTCGTGAAGATATCGGCGGGCGCGGCGGACCACGACATGCACGCCATGTACAAGGTCAACGTCGAGGACCTCTCCCAGCTGCTCGCTTACCACGAGGTCTTCGGCAAACTTAACGCTGACGGACAGCCCCAAGCCAAAGTAATTAGTGAAGTGGAAGTAGAAGCGGGAACTAGCGCCGCCATGTCCGCCGAGGAGAACTCGCCTGGACATCATGCCTGTGATATTTGTGGGAAGATATTCCAGTTCCGATATCAACTCATTGTTCACAGACGATATCATGGCGAAAGAAAACCATTCACTTGTCAAGTATGTGGATCGGCTTTTGCTAATCCCGTGGAGCTGTCAAGGCACGGGAAATGCCATCTTgCAGGTGACTCGGCGGAGCGGACCGCCAAGCGGCTGACGCAGGACAAGCCGTACGCGTGCACCACGTGCCACAAGACCTTCGCGCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACGGGGGAGACGCCCTACAGATGTCAATTCTGCGCAAAGACTTTCACCCGGAAAGAGCATATGGTGAACCACGTTCGCAAACACACGGGGGAGACTCCTCACCGGTGCGACATCTGCAAGAAGAGCTTCACGAGGAAGGAGCACTTTATGAACCACGTCATGTGGCATACGGGTGAAACTCCACACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCACTTAGCAAACCATATGAGATCACATACGAACGATACCCCGTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACAAGAAAGGAACACTTCACCAATCACATACTGTGGCATACCGGCGAAACCCCCCACCGCTGCGACTTTTGCTCGAAAACATTCACCCGCAAGGAGCATTTACTGAACCACGTCCGGCAGCACACGGGCGAGTCTCCGCACCGCTGCAACTACTGCTCCAAGTCCTTCACGCGGCGGGAGCATCTGGTCAACCACGTGCGCCAACACACCGGAGAAACGCCCTTCCAGTGCGGATACTGTCCCAAGGCCTTCACGAGGAAGGATCACCTAGTAAACCACGTGCGACAGCACACCGGCGAGTCCCCTCACAAGTGCTCATTCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCACGTCAGCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCAAGTCGCTGCACCGACTGCGCCAAGTTCTTCACCAGGAAGGAGCATCTCAACAACCACGTCAGGTGAGAACAAACATTGCTTGTGCGTCAGCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCAAGTAGCTGCACCTACTGCGCCAAGTCGTTCACCAGGAAGGAGCATCTCAACAATCACTTCAGCACACGGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAATCACGTCAGGTGAGAACAAACAATGCTTGTGCGTCAGCTGCACCAAATTGTTCACGCGCAAGGAGCACCTGACCAACCACGTGCGCCAGCACACGGGCAAGTGGCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCACTTCAGCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCAAGTGGCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCACTTCAGCTGCACCAAATCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCGAGTCGTCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCACGTCAGACAGCACACGGGGGAAACTCCGCACAAGTGCACGTTCTGCCCGAAGGCGTACTCGCGCAAGGAGCACCTCAACAACCACATCCGCCAGCACACCGGCGACGCGCCGCACTCCTGCACCTACTGCAACAAGAGCTTCTCCAGGAAGGAGCATCTTGTCAATCATGTCCGGCAACATACGGGCGAGACTCCGTTCAAGTGCACGTACTGCTCGAAGTCGTTCTCCCGCAAGGAGCACCTCACGAACCACGTGCACCTCCACACCGGCGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACCTTCAGCCGCAAGGAGCATCTCACCAACCATGTCAGGATACACACGGGCGAGTCCCCTCACCGCTGCGAGTTCTGCCACAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTCAAGCAGCACACGGGCGACACGCCGCACTCCTGCAAGGTGTGCTCCAAGGCCTTCACTCGCAAGGAACATCTGGTGGCTCATATGAGATCACACAGCTGTGGCGAGCGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCTCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCCCACAACAAGAACGGCAACGGCGCCAGGCCCTTCCGGTGCGACGTCTGCTCCAAGGACTTCATGTGCAAAGGTCATCTGTCATCGCACCGGCGCACGCACACGGGAGCGGCGGCGGGCGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTATACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGCGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGCCTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCAGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGGTACCTATACCTGCTCTGTACACACCGCACGAGGCGGCGGACGGCGCGGCCGAGCCCGCTGCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGCGAGCACGAGCCCAGACCTGCGGCGAATACGAGTCCAGTAGAAAGCGCTGTAGCACAAAACCCTCAAGCTAACGCAACTGTGATGCAAATTACCAGCCAACAAGtccgggcggcgggcggcgtgGCGCTGGAGGCGGCGGGCGCCACGTTCGCGCACCCCGTCTCCGTCACCTACTAG
Protein Sequence
MNTEHHNINTGGGQPPGNSEQQQQTVNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHPGQTQVTVSAAQQLPQIIATQTQTHDALAHAQQQELSQQQATGQVTTNSGQTHQQVPNNRVEFVHHNIDMVNHVGHHSQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPSDQHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLSIVKDEKCGSKIETAHFALPAEIKDLKSIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVISEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDSAERTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVSCTKSFTRKEHLTNHVRQHTGKSLHRLRQVLHQEGASQQPRQVRTNIACASAAPSRSRARSTSPTTCASTRASSCTYCAKSFTRKEHLNNHFSTRASRRTAAPTAPSPSPGRSISTITSGENKQCLCVSCTKLFTRKEHLTNHVRQHTGKWPHRCTYCAKSFTRKEHLNNHFSCTKSFTRKEHLTNHVRQHTGKWPHRCTYCAKSFTRKEHLNNHFSCTKSFTRKEHLTNHVRQHTGESSHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCTYCNKSFSRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHSCKVCSKAFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGNGARPFRCDVCSKDFMCKGHLSSHRRTHTGAAAGEAADGAAEPAADCGDCGVKCEKDAPEPEREHEPRYLYLLCTHRTRRRTARPSPLRTAATAASSARRTRPSPSASTSPGTYTCSVHTARGGGRRGRARCGLRRLRRQVREGRARARARARAQVPIPALYTPHEAADGAAEPAADCGDCGVKCEKDAPEPEREHEPRYLYLLCTHRTRRRTARPSPLRTAASSARRTRPSPSASTSPGTYTCSVHTARGGGRRGRARCGLRRLRRQVREGRARARARARAQVPIPALYTPHEAADGAAEPAADCGVKCEKDAPEPEREHEPRYLYLLCTHRTRRRTARPSPLRTAASSARRTRPSPSASTSPGTYTCSVHTARGGGRRGRARCGLRRLRRQVREGRARARARARAQVPIPALYTPHEAADGAAEPAADCGDCGVKCEKDAPEPEREHEPRYLYLLCTHRTRRRTARPSPLRTAATAASSARRTRPSPSASTSPGTYTCSIHTARGGGRRGRARCGLRRLRRQVREGRARARARARAQVPIPALYTPHEAADGAAEPAADCGDCGVKCEKDAPEPEREHEPRYLYLLCTHRTRRRTARPSPLRTAATAASSARRTRPSPSASTSPGTYTCSVHTARGGGRRGRARCGLRRLRRQVREGRARARARARAQVPIPALYTPHEAADGAAEPAADCGDCGVKCEKDAPEPEREHEPRYLYLLCTHRTRRRTARPSPLRTAATAASSARRARPSPLRTAATAASSARRTRPSPSASTSPGTYTCSVHTARGGGRRGRARCRLRRLRRQVREGRARARARARAQVPIPALYTPHEAADGAAEPAADCGDCGVKCEKDAPEPEREHEPRPAANTSPVESAVAQNPQANATVMQITSQQVRAAGGVALEAAGATFAHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-