Cpom003472.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia pomonella
Gene Symbol
Smarcc2
Assembly
GCA_033807575.1
Location
CM066345.1:8304972-8321659[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.8e-14 1.2e-10 42.6 0.1 3 44 959 1000 957 1002 0.95

Sequence Information

Coding Sequence
ATGAAAGTGTTCATGGACATGAAGCCAGGCGGCTCGCTCTGCACGGTGCTCGCCACCATGTTCCGTTTCAAGTCGGAGCAGCGGTGGCGCAAGTTCGACTTCCAGGTCGGTAAGAACCCGTCGCGCAAGGACCTGATCGTGCAGATGATGATGGAGATCGAGTCCGCGCTGCTGGGGGCGGAGGTGGTGCGCTCGCCCTGCGTCTTCATTCGGCCCGAAGTCGACAAGACCACCGCCAACAAGGTCAAGGATATCGTCGTTAATCATCAGGGAGAGATTTGCGAAGACGAAGAGGATGCGACGCATATCATCTACCCGAACGTGGATCCGGTGGAAGAGGAGTACGCGCGGCCGGTGTTCCGGCGCGGCCCCAACGTGCTCGTGCACTGGTACTATCTGCCCGACAGCCACGACACCTGGGCGCAGGCCGACCTGCCGGTTGACGTGCCGGAGACGGCCAACTGGGAGTGCACGCGCAGCGAGCCATGGCGCGTGACCGCGGCGTGGGTGCTGGACCTGCCGCAGTACAACGAGTGGATGAACGAGGAGGACTACGAGGTGGACGCTGCCGGCAAGAAGAAGGTGCACAAGCTCCGTCTGTCCGTGGAGGAGCTGATGCCGGGCGGCGAGACGTCCAGCAAGGGCAAGAAGGGCAAGCGCAAGCGCTCACCCTCGCCGCCGCCTCAGAAACACGCCAAGAGAAAGAGCCGCGGGACGAAGAAGCGTGACAACGACGGCGACGACGAGGAGGACGCCGCGTCGCGCGACAACACCGACGTCGCGCCCACGCCCGAGCCCGAGCGCCCGCCCGAGAGAGAAACGACGGCCGCGACGCCGGCCGCGGGTGCCGCGGagccgccggcgccggcgcccgaGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACCGCCACCCCCACCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACCGCCACCCCCCCCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACCGCCACCCCCACCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACCGCCACCCCCACCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACCGCCACCCCCACCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACCGCCACCCCCACCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACCGCCACCCCCACCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCCACGCCCGCGCCCGTCGCCGATACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACTGCCACCCCCACCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGTACCACCGCCACCCCCACCCGCGCCCGAGCTGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCCAACACGCAGCGACTCCCAACACGCAGGTACCACCGCCACCCCCACCCGCGCCCGAGCCGTCGCCCGCCGACGCGGCGCCCGCcacgcccgcgcccgcgcccgtcGCCGACACCCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGGAAACGACGGTGAAGGAGGAACCGGAAGACAATGTGACGGACCAGACGCACCACATCGTGGTTCCGTCGTACTCGGCCTGGTTCGACTACAACTCCATACACACCATCGAGAAGCGCGCCCTGCCGGAGTTCTTCAACGGGAAGAATAAGTCCAAGACGCCTGAGATCTACCTCGCATACAGGAACTTCATGATCGACACATACCGGCTGAACCCCACGGAGTACTTGACCAGCACGGCGTCGCGGCGCAACCTCGCCGGCGACGTGTGCGCCATCATGCGCGTGCACGGCTTCCTGGAGCAGTGGGGGCTCATCAACTACCAGCTGGAGGCGGAGTCGCGGCCGACGGCCATGGGCCCGCCGCCCACGTCGCACTTCCACGTGCTGTCCGACACGCCGTCCGGCCTGCAGCCGCTCAACCGCGCCGCCTTGCCGAGACCAGTGGAGACCGCGGCGGTGCCGAAGACGGAGGCGGGCCTGCCGAACGGCGTGGACACGACGGCCCCGGCGGCGGCCGTCAAGGCGGAGAGCCTGCTCGAGATGGGCGGCGCGCCGGGACTCAAGCTCGATCAGTACCGCGGCGGAGCACGCGGTCGCGAGTGGACGGAGCAGGAGACGCTGCTGCTGCTGGAGGGGCTGGAGCTGCACCGCGACGACTGGAACCGCGTGGCCGCGCACGTGGGCACGCGCACGCACGACGAGTGCATCCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTATCTGCAGGATGGCGCCTCCGGTGGCGTGCTAGGGCCGCTGGCGTACCAGCCGATCCCGTTCAGCAAGCAGGGCAACCCCGTAATGAGCACCGTGGCCTTCCTCGCGTCCGTCGTGGACCCGCGCATCGCCTCCAAGGCCACCGGTGCCGCCATGGCCGAGTTCGCCGCCATCAAGGACGAGGTGCCGGCGGCCATGATGGAGGCGCACGTGAAGGCGGCGGAGGCGCACGGGCCGGCCGCGGCGCTGGCCGCCACCGGCATCGCCGGCACCGCGCCCGACCTGCCGCCCTCGACCGAAAAGAAAGAAGGCGCCAGCGATGTAAAGACGGAGGCGATGGAGGTGGAGGAGGGCGAAGTGAAGCCCAAGGAGGAGCCCGCCGACACGCCCGCGGCCGACGAGCCCAAGGACACTAAAGAAGCGCCGCCGCCTACTCCAGATGGCTCGAGCCCCTCGACGGTGGACGCGAAGCTGCAGTCCGCGGCCGCGGCCGCGCTGGCTGCTGCCGCCGTGAAGGCCAAGCACCTCGCCGGCGTCGAGGAACGCAAGATCAAGTCGCTGGTCGCGCTGCTGGTTGAAACGCAGATGAAGAAGCTCGAGATTAAGCTGCGACACTTCGAGGAACTCGAGGCTACCATGGAGCGCGAGCGTGAGGGTTTAGAATACCAGAGACAACAACTGATCCAGGAGAGGCAGCAGTTCCACCTGGAGCAGCTGAAGGCCGCAGAGTTCCGTGCACGCCACCAGGCGCATCAAAGGATGCAGCAGGAGGGCGgcgcggcgacggcggcggcggcggcggcggcggcgggcccgGCGGCCGAGGCGCCGGCGGCCGACGCGGCGCCGCACCACGCATAG
Protein Sequence
MKVFMDMKPGGSLCTVLATMFRFKSEQRWRKFDFQVGKNPSRKDLIVQMMMEIESALLGAEVVRSPCVFIRPEVDKTTANKVKDIVVNHQGEICEDEEDATHIIYPNVDPVEEEYARPVFRRGPNVLVHWYYLPDSHDTWAQADLPVDVPETANWECTRSEPWRVTAAWVLDLPQYNEWMNEEDYEVDAAGKKKVHKLRLSVEELMPGGETSSKGKKGKRKRSPSPPPQKHAKRKSRGTKKRDNDGDDEEDAASRDNTDVAPTPEPERPPERETTAATPAAGAAEPPAPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQVPPPPPPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQVPPPPPPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQVPPPPPPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQVPPPPPPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQVPPPPPPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQVPPPPPPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQVPPPPPPAPEPSPADAAPATPAPVADTHDDSQGKHSDSNTQVPLPPPPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQVPPPPPPAPELSPADAAPATPAPAPVADTHDDSQGKHSDSQHAATPNTQVPPPPPPAPEPSPADAAPATPAPAPVADTHDDSQGKHSDSNTQETTVKEEPEDNVTDQTHHIVVPSYSAWFDYNSIHTIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYLTSTASRRNLAGDVCAIMRVHGFLEQWGLINYQLEAESRPTAMGPPPTSHFHVLSDTPSGLQPLNRAALPRPVETAAVPKTEAGLPNGVDTTAPAAAVKAESLLEMGGAPGLKLDQYRGGARGREWTEQETLLLLEGLELHRDDWNRVAAHVGTRTHDECILHFLRLPIEEPYLQDGASGGVLGPLAYQPIPFSKQGNPVMSTVAFLASVVDPRIASKATGAAMAEFAAIKDEVPAAMMEAHVKAAEAHGPAAALAATGIAGTAPDLPPSTEKKEGASDVKTEAMEVEEGEVKPKEEPADTPAADEPKDTKEAPPPTPDGSSPSTVDAKLQSAAAAALAAAAVKAKHLAGVEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARHQAHQRMQQEGGAATAAAAAAAAGPAAEAPAADAAPHHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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