Cpom005080.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066345.1:34770461-34771309[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-07 0.00013 22.9 0.0 4 43 20 59 17 60 0.93
Sequence Information
- Coding Sequence
- atGCCAAACAAGTACAAGAGAAAAGCAATAGCTGTCAGAGGTAATTGGTCAGAACTTTCACTTAAGGCTGCTATTAGTGCTGTGAAAAATGATCGGTTATCCGTGCGAGCGGCGGCTATCCAGAACCAAATACCACGAAAAACGTTAGAAAGAAGATTGAAGAAGAATAATGACAAAAAGGGGCCTATGGGACCATCTTCTTTGTTTGGAAAAGAAAATGAGGATAAACTGGTAGCTCACATCAAAGCATTGCAAGCTAAAGGTTTTCCATTGTCAATGACGGATGTTAGAAGAATAGCTTACGATTTTGCAGAGCAATTACAATTACAGCACAGATTTAATACAGAAACCCAGAAAGCAGGATATGACTGGTTGCAAATGTTCCTAAGTAGACACATAGATATTACACTTAGAAAGTCAGAAGGTGTATCATTGTCCAGGGCCAATGCCATGAATAGAACAGAAGTAAATGCTTATTTTCAACTTCTAGAAAGCGTTTTAATACAGGATAATGAGATGTTAGCACCAAATTGTGTATTTAACATGGATGAGTCAGGCTTGCAGTTAACTCGGGTAAACAAAACAAAGGCTATCCGAAGGCTGTCGGATAGCAGTGGCGATGTCCCCCTTGCCATAATATCGAAaaacaagaagaaaaagaaCATGAAAGGGGAGGATAACTGTCGAGGATGCGGAGAAAATTATTACGAAACTCTTCTTGTTGAAGATTGGCTCCAGTGCACGATTTGTATGTTTTGGGTTCATGAAAATTGCACCGAATTCGACGATGCATGCTCCAAATGTGGCCAGGAAAAGAAGAAGCGCCTCAGGGCCAAAAAACAAGACTGA
- Protein Sequence
- MPNKYKRKAIAVRGNWSELSLKAAISAVKNDRLSVRAAAIQNQIPRKTLERRLKKNNDKKGPMGPSSLFGKENEDKLVAHIKALQAKGFPLSMTDVRRIAYDFAEQLQLQHRFNTETQKAGYDWLQMFLSRHIDITLRKSEGVSLSRANAMNRTEVNAYFQLLESVLIQDNEMLAPNCVFNMDESGLQLTRVNKTKAIRRLSDSSGDVPLAIISKNKKKKNMKGEDNCRGCGENYYETLLVEDWLQCTICMFWVHENCTEFDDACSKCGQEKKKRLRAKKQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411395; iTF_00411383; iTF_00411385;
- 90% Identity
- iTF_00411395; iTF_00411383; iTF_00411385;
- 80% Identity
- iTF_00411395;