Basic Information

Insect: Cydia pomonella
Gene Symbol: clz9
Assembly: GCA_033807575.1
Location: CM066357.1:18722787-18725450[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.5e-07 0.00012 23.0 0.0 1 36 8 43 8 49 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.5e-07	0.00012	23.0	0.0	1	36	8	43	8	49	0.89

Sequence Information

Coding Sequence: ATGGcaccgaagaaaaattatacCCCCGAACAAATGGGGAGAGCATTGGATGCTGTAAGGATGGGAGAAACTATAAGCACAGCTGCCCTCCGGTTTGGGGTTCCTCGAATAACCTTGCACAACAAGGTGACAGGCAAAAGTCCTGCAGTTTGTGCTATGGGGCCTCAAACTATCCTTACGGCAGAAGAAGAGGACATTCTGGTAAAATGGTTGGTCGCAATGAGTGAAAAGCACTTTCCCATAAATAGACAATTATTAACAGAGAGCGtgcaaaaaattatattagatcaAGGGAAGGCCAATCCTTTTACAAATAACAAACCTGGAAAAAAGTGGTTTTCGtcatttttaaaacgtcatCCAGATATAACAGAAAAAACAGCACAAAATCTTTCGAAGTCGAGGGATGACGTTACCGAAGAAGGCATACGCAAATGGTTTAATGAAATAACGACATACATAGAAGGTGTAGGTTTAAAAGATGTTTTAGATGACCCTAGCCGGATATTTAATACCGACGAAAGCGCATTTTTTTTGTCACCAAAAGCAGGCCGAGTTCTTTGTAAACAAGCAGAAAAACATCTGTACCAATTCTGCGGCGATGAAAAAGACAACCTAACTGTTTTACTCACTGCCAGTGCCACCGGTCAACTAGCACCACCAATGATAGTCTTCAAGTATGAAAGACTGCCAGCGCACGTAACAGCCACTGTTCCTGAACATTGGGGCATAGGAAAATCTGAATCAGGGTGGATGTGTGGGAGCACATTCTACGAGTATgtcataaatattttcaatccaTGGCTAGAAGAGCAAAAGATACCAAAACCGATCCTGTTTTTTTTAGATGGCCACAGATCACATTTAACATTACATCTATCAGAATTTTGCTCCGCACACGGCATAGAGCTCATTGCTCTGTACCCCAACTCAACCCATATCCTTCAACCAATGGATTTAGCAGTGTTTCGCCCTTTGAAAGTAGCCTGGAGAAAGGAAGTTTCTAAGTGGCAACTAAATAATTTGGGTAAAGTCCTGAAAAAAGATCACTTTGCACCTGTGCTAAAAGACGCTATTAGCACAATCTCAGAAGAATGCATTCGGAATGGGTTCAGAGCTGGAGGTTTGCACCCTTTCGGACCAGACTATATTGatatgagtaaaaaaaaaaaaaaacatacacaaaTTATTGAAAAGGAAGTGGACCTAAAGCAAATAGAATTTGTGAAATACTTGGAAGCTGAGATAGTTGCTGTTTATTCGAGACAAAAGTTAGACTTGTTCAACGCATTATATCTCAAAGACAGGAGGACCGTTGAACAGAATATACCAAGTGAAGATGAATCGCTGTTTGTTATCTGGGCCAAAAACAAACAAGAGTCGTTTAATAGTGAAAGGTCTAGTCCCCAAATAGATTCAGTAGAAAATCAGCTCTCCACATCAGAAGCTGCTCCAGATAACACAGAAAGTGAAGTGCAACATCCAAATTTGACGGCTACTTTAACCACGGAGGGTTCTCTGCTGTTAGAATCTCAGAAAACATCATCTCTCAAACCACTGGAATGCACTGAAATTGTACCATGCCGAGATTCTTTAGCTTTACCTGCAATAAGTGCATTACCTGACCAAATGGAGGAACCGCAACATGAGCAGACAAACCGAATTAGTGTCGAAAATCAAGAATTATCCTGTAGTACATCATCTACGCAGACCCAAACATTCCCCATAAATCAAGCATTCGAAAACCAAATACCGGAATTTGTCCCAAGAACTAATAACACGGAAAGCCCATCAGCAACACCCGAGAGTGCGTCAGAAACTACTGCCAGAGTCCCTGTACCTGGCGTAACTCCTCAAAAACATCCTTTAGAAGCTGCTTTAGGTGTAGTGGTTCCATCACCCTTTAAAAAAAGCCTTTTTTGGCCCGAAGAACCGAagggaaaaaaaaagaaaaaagagaAGGTACCATTTGCAGTGACTAGTAAATCTTGGCAAGAATATCACAGAAAAAAAGAGATAGAAAAACAGAATCTACaacaagaaaaagaaaagagaGCCCTAGAAAgacagcaaaaaaaaatattaaaagaaaaaaatattgctgAGAAAAAAGCAAAATTTAAACCGAAGTCTAAACATCGCAATGACACTTCTTCTGAAGACACAGATGCAGAGATTGTATACGCTGAAAGTGATGATAGTGTTTTAAGTAATTCTGATAAAAGTAGAGAAAAATCTCAGGATCCACAACCATCAAAAAGGCGCAAAATCCCCTTGACGAAGCAAGGTACAAAATCTTCTAAACGTCGTCGAAAAAATCTGAAATGCAATAAAAGTGATACAGATTCTGATGATGAACCTTTAAGCAGCTTAACAGCAAATAAAAACTCTGCCTTGGTAGTTGCTAAAGGACAATTTGTCATAGTCAAGTATGAAGGAGAATATTTTCCTGGAAAAACTGAGGATGTCGACCATAACCAATATGAAGTAAGTACCATGATATTATCAACTGGAAACTCTTTCAGATGGCCTGACAAGCCTGATAAAATCTGGTACAATGCTGGAGATGTTGTGGAACTTATAAATACCCCGTTGCCTCTTAATAATCGAGGCTTctacaaaattaaagaaatggAGAAGTATTTGCCAAATATATACACCTAG
Protein Sequence: MAPKKNYTPEQMGRALDAVRMGETISTAALRFGVPRITLHNKVTGKSPAVCAMGPQTILTAEEEDILVKWLVAMSEKHFPINRQLLTESVQKIILDQGKANPFTNNKPGKKWFSSFLKRHPDITEKTAQNLSKSRDDVTEEGIRKWFNEITTYIEGVGLKDVLDDPSRIFNTDESAFFLSPKAGRVLCKQAEKHLYQFCGDEKDNLTVLLTASATGQLAPPMIVFKYERLPAHVTATVPEHWGIGKSESGWMCGSTFYEYVINIFNPWLEEQKIPKPILFFLDGHRSHLTLHLSEFCSAHGIELIALYPNSTHILQPMDLAVFRPLKVAWRKEVSKWQLNNLGKVLKKDHFAPVLKDAISTISEECIRNGFRAGGLHPFGPDYIDMSKKKKKHTQIIEKEVDLKQIEFVKYLEAEIVAVYSRQKLDLFNALYLKDRRTVEQNIPSEDESLFVIWAKNKQESFNSERSSPQIDSVENQLSTSEAAPDNTESEVQHPNLTATLTTEGSLLLESQKTSSLKPLECTEIVPCRDSLALPAISALPDQMEEPQHEQTNRISVENQELSCSTSSTQTQTFPINQAFENQIPEFVPRTNNTESPSATPESASETTARVPVPGVTPQKHPLEAALGVVVPSPFKKSLFWPEEPKGKKKKKEKVPFAVTSKSWQEYHRKKEIEKQNLQQEKEKRALERQQKKILKEKNIAEKKAKFKPKSKHRNDTSSEDTDAEIVYAESDDSVLSNSDKSREKSQDPQPSKRRKIPLTKQGTKSSKRRRKNLKCNKSDTDSDDEPLSSLTANKNSALVVAKGQFVIVKYEGEYFPGKTEDVDHNQYEVSTMILSTGNSFRWPDKPDKIWYNAGDVVELINTPLPLNNRGFYKIKEMEKYLPNIYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00462334;
90% Identity: iTF_00462334;
80% Identity: -