Cpom036823.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066371.1:399234-413658[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-05 0.0095 16.9 0.0 7 35 46 73 42 78 0.88 2 2 0.048 37 5.4 0.0 7 34 185 211 182 220 0.84
Sequence Information
- Coding Sequence
- ATGGACCACGGGATACCTCTCAATATTCACGCCAGGCCCCGAATAGTCGGACGGAGACCTAATGCTATAGTCAACATAGAAACggacgttttccaagaaaaaagctataaacAGTATTCATCCCAGCACCTTCGAGACGCGCTGATAGCTGTGAAGAAAGGATATAGTGTATACGCTGCTTCTAACAAATACGGGGTACCGAGGAAGACTTTAAGGAATTGGATGGAAAAGTATGACATAAAAAGTCAGTTTTCCAAAGATTTCCCGATCGCAAACGTGCAGTGCCAGTACGACTCTCCTGACGAGAGACCGGAGCAGACAGACCACACATACGACACGCGAGACGAGCCGCCAGCCTTCATCATACACCAGCCAGTTCAAATCCAGGCGTCAGCGGCACCGTACGTGGAGGTGGCGCCAGGCCAGAAGATATACCCTGCTGTCAATGTCATACATGTTGGGGAAAACAATAGGCAACAGCAGCAACAAACCCACCAGACTGAATACATCAACATCAACAAACGCATCCGGCGCAGCGAAGTGGTGCTGCGGCAGGCCGCAGATTGCGTCAGTCGAGGACTTACCTTCCAGACGGTGTCGCATCAGTTCAACATACCCATATCTACGATACGTTTCTTTATGGCGAGAAAAGGAATCCTACCACAAAGGCGACGGGGACGCAGTACAATGGCCCCGCGCCCCTGCTCCAGCCCGGAGCCGCCATACCACATGCAGCACTACAAACTGCCCGACATGGTGGCGCTGCGGGACAGCGAGAACTCCAACGAGTAA
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKDFPIANVQCQYDSPDERPEQTDHTYDTRDEPPAFIIHQPVQIQASAAPYVEVAPGQKIYPAVNVIHVGENNRQQQQQTHQTEYININKRIRRSEVVLRQAADCVSRGLTFQTVSHQFNIPISTIRFFMARKGILPQRRRGRSTMAPRPCSSPEPPYHMQHYKLPDMVALRDSENSNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680482;
- 90% Identity
- -
- 80% Identity
- -