Cpom022764.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066357.1:8942826-8943572[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-08 2e-05 25.4 0.0 3 37 18 53 16 60 0.90 2 2 8.5 6.6e+03 -1.8 0.0 8 14 139 145 138 148 0.80
Sequence Information
- Coding Sequence
- ATGCCTGCAAAATATCAGAGGAGCACACTTAGAGCCACCGCCTATACCGATCATGATTTACGAGAAGCTGTGGAAAAATTTAGAAGTAAAGAACTTTCAAACTATGCCGCGTCTAAATTATATGGGATACCGACATCTACTCTCAACGATCGTGTGTTGGCAAAAACGGGTATTAAAAGCCAAACACTAGGAAGAGCCCCAGCTATTCCTCTAGATCAGGAAACTAAGTTGGCTGAATATTTGCGCACGCTTGAAAAATGGGGTTGGGGTTTATCAAAAGAGGAAGTTTTAGATTTAGTGGCAGCGTTTGTAcgaagaaataatttaaaaacaccGTTCAAAGATGACAGGCCAGGCACCAAGTGGTTCGTGGCTTTTAGAGAGCGACAAAAATTATCAGTGAAGAAACCGCAAGCAGTAGAAGCTGTACGAAAACGAATGACGGATCCATTCATTATTGACGAATACTTTACACTTTTGGAAGAAGTCCTCACAAAGAACAATATTAAAGATAAGCGAAAAATATGGAATCTAGATGAAACCTCCGTCTCTCTAGATCCGAGTAGGACAAAAGTTGTTGGTGCCATTGGACAACCATGTACAAGAACGACTGCTGGTACAGGTAAAGaaaatattactgttttaaCCACAGTTAACGCTGCAGGTGAGAAAATAAATcctttaattgtatttaaaggAAAACATGTCTACCAGGAATGGATTCGCggatttcgcttagctatatga
- Protein Sequence
- MPAKYQRSTLRATAYTDHDLREAVEKFRSKELSNYAASKLYGIPTSTLNDRVLAKTGIKSQTLGRAPAIPLDQETKLAEYLRTLEKWGWGLSKEEVLDLVAAFVRRNNLKTPFKDDRPGTKWFVAFRERQKLSVKKPQAVEAVRKRMTDPFIIDEYFTLLEEVLTKNNIKDKRKIWNLDETSVSLDPSRTKVVGAIGQPCTRTTAGTGKENITVLTTVNAAGEKINPLIVFKGKHVYQEWIRGFRLAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -