Cpom022178.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066357.1:4249902-4251279[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-09 1.4e-06 29.2 0.0 3 39 12 48 10 53 0.95 2 2 0.66 5.1e+02 1.7 0.0 20 33 140 153 136 158 0.78
Sequence Information
- Coding Sequence
- ATGACGAAGCGACAGTACAATACTTGGTCAAGTGACAATATGGAAAAAGCCCTCAAAGGGTATAAAAATGGAAGTTTAAGATTTAATGAAGCTTGTCGTGTATTTAATATTCCAAAGCCAACTTTTCGACGCCATTTAAAAGGGTTAAATGTGCACGAAAAAATTGGACGTCCAAAATATTTGACAAAGGAAACGGAAGAAGAGCTAGTGAAGCATGTTTTAGAACTAGAATCTAGTTTTTTTGGCATCACTGTGCGTGATTTACGTCAACTGGCATACCAGTTAGCGGAAAAATATGGTTTACAACATAAATTTAATCATGAAACTAAACTGGCTGGGTGGAAATGgtattatacatttttgaaaagcCATCCTCAAATATCATTAAGAACTCCAGAACCGACATCCATTGCTTGCTGCAAagCCCAGCAAATTTACAACGTTGATGAGACCGGCTTGAGTACTGTGCATAAGCCTCCAAAAGTATTAGCTCTTAAGGGCAAACATCAAGTTGGTGCTGTTACAAGTGGAGAGCGGGGTTTAAACACAACATGCATCTGCTGTATGAACGCTGCTGGAGAATTCATTCCACCTATGCTGATTTTTAAACGCAAAAGAATGACAGATGATCTTAAAAGAGGAGGACCACCAAATACAGTGTACAGTTGCTCTGATAGTGGATGGATAACTTCTGAGTTATTCGTTGATTGGCTGAAGCATTTTATCAAGTCTGTAAGGCTAGAAAAATCTAAAGAAAGGCAGATCCTTCTCATTTTAGATGGACATTCGACGCATACCAAAAACTTAGAGGCTATCAATCTCGCACGTGACTATGGTATTGTAATGCTGTCCTTGCCACCTCACACCACCCATAAGCTTCAACCGTTGGACCGATCGTTTTTCAAACCTCTGAAGCAAAATTTCAACGCGGCTTGTACATCATGGATGAGAAATCACCCTGACTGCGTAATAAAGCAGGCAAACATATCAGAGCTTTTGGGGATGTCATACCGTCGAGCTGTTTGCATGGAAACAGCTATACACGGATTTGAATCTTGTGGACTATGGCCTTGTAATCGGTTCAAAATCAGAGATGACGAATATGTTATATTGAACGAGGATTGTGAGGAGCAACAAAATGTAGGTTCATCAGTTAGCTCCCATTTGGCTGTGGAACAACAAAACCTTGAACCGGATCAGCCAGCAACATTGACGTCAAACGCTAAACCAAATGCTGCACAAGAAAACCATACTCCGGCACCTTTGAATCCAGATGGTAAGGAGATTTCAAAGTTAGGTTTTTAG
- Protein Sequence
- MTKRQYNTWSSDNMEKALKGYKNGSLRFNEACRVFNIPKPTFRRHLKGLNVHEKIGRPKYLTKETEEELVKHVLELESSFFGITVRDLRQLAYQLAEKYGLQHKFNHETKLAGWKWYYTFLKSHPQISLRTPEPTSIACCKAQQIYNVDETGLSTVHKPPKVLALKGKHQVGAVTSGERGLNTTCICCMNAAGEFIPPMLIFKRKRMTDDLKRGGPPNTVYSCSDSGWITSELFVDWLKHFIKSVRLEKSKERQILLILDGHSTHTKNLEAINLARDYGIVMLSLPPHTTHKLQPLDRSFFKPLKQNFNAACTSWMRNHPDCVIKQANISELLGMSYRRAVCMETAIHGFESCGLWPCNRFKIRDDEYVILNEDCEEQQNVGSSVSSHLAVEQQNLEPDQPATLTSNAKPNAAQENHTPAPLNPDGKEISKLGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -