Cpom000104.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- Jarid2
- Assembly
- GCA_033807575.1
- Location
- CM066344.1:1368651-1396560[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-17 1.5e-13 52.2 0.0 7 88 585 663 581 664 0.89
Sequence Information
- Coding Sequence
- ATGGTCGAGGTGTTCGCCCCCTCATACCCGCCATCGCCGGTCCCCTCCAACGGAGTGGAAGACTGGTGTTTACCCCCAGCCATTAAGGCATCGCGGTCTCTCAAGTCCCTGTCTGACATCAGCAGTGACATCATCCGGCTTGGAACTCCACCAGGGTGGACCGCGACCCCAGAGTTCCAAGACCCACAGTCCGAAGGAGATTTGGTACGAGGAAAGGAAATAATGGACGAAAACATTAAGAAAGAACTTGAAGAAATCAGATTCGAAGTCTCAGATAAAATAgaaatgaaatctaaaaaatCTTCAGAAAAAAATAACGTTTCTGATAATGAGGATTCAGGTATTGATGTACGAGCGAAAAAGAACCAAAATACAAACAAAGCTAAGACAGATAAGGACAGTGAGAAAGCAGGCCAGAAACATGAAAGGGACAAAGAAGACAAGAAAGCGGGACACAAAGAAGGCAAGAAAGTAGGACATAAAGATGATAGGGACAAAGAAGGCAAGAAAGTAGAACAAAAAGATGAGAGGGACAAAGAAGGCAAGAAAATAGACCAAAAAGATGAGAGGGCCAAAGAAGGCAAGAAAGTAGGACAAAAAGATGAGAAGGACAAAGAAGGCAAGAAAGTAGGACATCAAGATGATAGGGACAAAGAAGGCAAGAAAGTAGAACAAAAAGATGAGAGGGAAAAAGAAGGGAAGAAAGTAGGACAGAAAGATGAGAGGGACAAAGAAGGCAAGAAAGTAGGACAAAAAGATGAGAGGGACAAAGAAGACAAAAATACCGGACAGATAGATGAGGGAGACAATATAGAGAAGAAAGCGGGACAGTCAGGTGAGGGAGACAAATTAGAGAAGAAAGCGGGACATAGAAATGAGAGGGACAAAGAAGACAAGAAAGCAGGAGAGAAAAATAAGAGGGAAAACGATGACATCAGTAAACCAGACGATGCAACAAAGAGGATTAAAGGAAAGGGAGTGGGGAAGAAAACTGTGCAGAAAGAAACAAGGGGCAGgaaacCGAAAGTTGCTCCGGTCAAAGAGAAGAAAACGTTACCGAAGCGAGCGGCGAAGGCAGCCCCTGCCCAGGAAGAGGTGGCCACCAACACGAGACTTCTCAGGAACTCCCGCGACCCTCCGCCGCCAAACCCGGACGTGTACGAGTTCGACGAACTAGAAGGCTCTCGGCCTCCCTCGGGCCTCCGCCGCCGCAACCAGCCCACCCCGGACCCCCCCGCGCAGAGCCCCGAAAGCATACGATACATGGACATATGCCCTACAAGCTCTCAACTAGTCAAAATTAATACCAAAAAAGAAGAAGTTGGGAACGTACTTAGTGTCAGCTTGGTACCTAAGGACGATATATATAAGAAGCAGAAGAATTGGATAGATAATCTGACGAATAGGCCAGCGCTGTTAAACAAGTTTTTCAACTGCTTACCGACAGAACTTCAGAACGAGCTTGGGAGCTTGGCCACGGAGGGGACTGGGCGGGAGGAGGCTTATTTGGACGAAAAGGCGGGGACGGTCTTAGAGGCACCCACGTACTATCCTACGGCTGAGGAGTTTGAGGATCCGATAAAATACTACGACAAAATCGCCCCCGAGGCCTCAAAATACGGCCTCTGCAAAATAGTTCCCCCTGAAAACTTCAAACCAACATGCACGATGAGCGACACGATCCGCTTCGCGGTCATATACCAGTACATCTCCAAGATGTACAGCCGCTGGGGCCCCGTGTCCAGGGAGCTGGCTGCCATCAAGGCGCACCTGCGGACCCAGAGCGTCGTGTTCGCGCGGTCTCCCCTCTTGGACGGCAGCGAAGTGAACCTTCCCAGGCTATACCACGCCGTGGAACGCAACGGCGGTCTCAGCAACGTCATACAACGCAAGCGGTGGGGCCGCGTCGCCGACGAGATGAAGCTGACCAAGTTGCAGCACCCGGAGCGCAAGCTGGACCCCATATACATGCGATATCTGCTGCCCTACGCCACGTTGTCCGATCAGGAACGCCAAAGTATAATGGCGGAAGTGGAAAAATGCTGGACCACCAAGTACCAGAAGATGCTGGAACGGGCCCGCAATCCCTTCCAGCGTCAGAACCGGATGCTGGGCACcgagtgcgagtcggaatcTGACGACGAAGGAGAGGATGGaaacacagctggtgcgctcCAAGAGGCagaggactgcatagtgcaggggcgcacaatgaacctcgtcacattcaaaAAAATCGCGACGTCGCTCATGGACGCGCACTTCGACCCGTCCAAGCAGCCGCCGGGCGCCGTCGACGTCGAGAAGGCGTACTGGCGCGCCGTGCTGCTTGGCACCGAGCACATCGtgGCCAACACGGCGTCCATAGACACGGGAGAGGAGGGTTATGGTTTCCCGAAGGACCCGCAGGCCGACTACGGCGCGCATCCCTGGAATCTAAAGGTCCTGGCGCGGAACCCGAACAACGTGCTCCGCTACCTCGGCCCAGTGCTGGGCGTGACTGTGCCCACGCTCCACCTCAGCATGCTGTTCAGCACCTCGTGCTGGCACCGCGACCCCCACGGCCTGCCCTGGACCGAGTACATGCACAGCGGGGCCGAGAAGATATGGTACGGCATCCCCCGCGACGAAAGCGCAAATTTCCGTCGCGCAGTAGAAACACTGTGCCCCGCCTACTGTCAGAACAAGTCCATCTGGCTGGCCTCCGAGATCACCATGGTGCCACCCAACATCCTCAGCGAGCATGGAGTGAAGCTGTCAAGGCTGCTGCAGCGGCCCGGGGAATATGTCCTGGTGTTCCCCGAAGCCCATTCCTGCTCAATAACTACTGGGTTCGGGATATCGGAGAGTGTATACTTTGCATCAAACGCTTGGCTGACGGATGTGTTTAAACTGTTTCaaGAGCTGCGCAACAGCTGCGAGCCGACCATGTTCTCCCTGGAGCAGCTTCTCCTGAACGGCAGCGCCGACTCCTCGGCCCCTCACCAGGTGTGCTCCGTGCTGGCCACGCTGCTCAGCGCCGAGCTGGAGCACCGCCGCGCCCTCGACCACAAGGGGCTCAAGGTGCAAGAACGTCCCCCATCGTCGGCGCCGCTCAACACGTCGTACTTCCGCGCGTGGAACACTCGCGACCAAGACGAGTGCGAGTACTGCCGCTCCACCCTGTTCCTGTCCAAGGTGACCGGGCTCACGGGCCGCAAGTCCGCCGTGTGCCCCGAGCACGCGCTCCGCCTGCTGGAGACCAGGAAGCACAAGAACGTGGATCTGCACACGCTCGAGTTCCTCTCGTCGTTCACCACGCCCGCGCTCGAGGAGATGCTGGAGCGGCTCGACGCGCGCACCGCCGGCGACCAGAGCGCCCACGCGGACCCCGAGTAG
- Protein Sequence
- MVEVFAPSYPPSPVPSNGVEDWCLPPAIKASRSLKSLSDISSDIIRLGTPPGWTATPEFQDPQSEGDLVRGKEIMDENIKKELEEIRFEVSDKIEMKSKKSSEKNNVSDNEDSGIDVRAKKNQNTNKAKTDKDSEKAGQKHERDKEDKKAGHKEGKKVGHKDDRDKEGKKVEQKDERDKEGKKIDQKDERAKEGKKVGQKDEKDKEGKKVGHQDDRDKEGKKVEQKDEREKEGKKVGQKDERDKEGKKVGQKDERDKEDKNTGQIDEGDNIEKKAGQSGEGDKLEKKAGHRNERDKEDKKAGEKNKRENDDISKPDDATKRIKGKGVGKKTVQKETRGRKPKVAPVKEKKTLPKRAAKAAPAQEEVATNTRLLRNSRDPPPPNPDVYEFDELEGSRPPSGLRRRNQPTPDPPAQSPESIRYMDICPTSSQLVKINTKKEEVGNVLSVSLVPKDDIYKKQKNWIDNLTNRPALLNKFFNCLPTELQNELGSLATEGTGREEAYLDEKAGTVLEAPTYYPTAEEFEDPIKYYDKIAPEASKYGLCKIVPPENFKPTCTMSDTIRFAVIYQYISKMYSRWGPVSRELAAIKAHLRTQSVVFARSPLLDGSEVNLPRLYHAVERNGGLSNVIQRKRWGRVADEMKLTKLQHPERKLDPIYMRYLLPYATLSDQERQSIMAEVEKCWTTKYQKMLERARNPFQRQNRMLGTECESESDDEGEDGNTAGALQEAEDCIVQGRTMNLVTFKKIATSLMDAHFDPSKQPPGAVDVEKAYWRAVLLGTEHIVANTASIDTGEEGYGFPKDPQADYGAHPWNLKVLARNPNNVLRYLGPVLGVTVPTLHLSMLFSTSCWHRDPHGLPWTEYMHSGAEKIWYGIPRDESANFRRAVETLCPAYCQNKSIWLASEITMVPPNILSEHGVKLSRLLQRPGEYVLVFPEAHSCSITTGFGISESVYFASNAWLTDVFKLFQELRNSCEPTMFSLEQLLLNGSADSSAPHQVCSVLATLLSAELEHRRALDHKGLKVQERPPSSAPLNTSYFRAWNTRDQDECEYCRSTLFLSKVTGLTGRKSAVCPEHALRLLETRKHKNVDLHTLEFLSSFTTPALEEMLERLDARTAGDQSAHADPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -