Cpom038853.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- Jarid2
- Assembly
- GCA_033807575.1
- Location
- JAPFFR010000148.1:137962-162386[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-17 8.5e-14 53.0 0.0 7 88 488 566 484 567 0.89 2 2 7.3 1.4e+04 -2.2 0.0 34 56 644 658 629 692 0.62
Sequence Information
- Coding Sequence
- ATGCCATGTGCCATGTGTAGGGCATCGCGGTCTCTCAAGTCCCTGTCTGACATCAGCAGTGACATCATCTGGCTTGGAACTCCACCAGGGTGGACCGCGACCCCAGAGTTCCAAGACCCACAGTCCGAAGGGGATTTGGTACGAGAAAAGGAAATAATGGACGAAAACATTAGGAAAGAACTTGAAGAAATCAGATTCGAAGTCTCAGATAAAAGAgaaatgaaatctaaaaaatCTTCAGAAAAAAATAACGTTTCTGATAATGAGGATTCAGGTATTGATGTACAAGCGAAAAAGAACCAAAATACAAACAAAGCTAAGACAGATAAGGACAGTGAGAAAGCAGGTCAGAAACATGAAAGGGACAAAGAAGACAAGAAAGCGGGACACAAAGAAGGCAAGAAGGTAGGACATAAAGATGATAGGGACAAAGAAGGCAAGAAAGTAGAACAACAAGATGAGAGGGACAAAGAAGGCAAGAAAGTAGGACATAAAGATGATAGGGACAAAGAAGACAAAAATACCGGACAGATAGATGAGGGAGACAATATAGAGAAGAAAGCGGGACAGTCAGGTGAGGGAGACAAATTAGAGAAGAAAGCGGGACATAAAAATAAGAGGGACAAAGAAGACAAGAAAGCAGGAGAGAAACATAAGAGGGAAAACGATGACATCAGTAAACCAGACGATGCAACAAAGAGGATTAAAGGAAAGGGAGTGGGGAAGAAAACTGTGCAGAAAGAAACAAGGGGCAGgaaacCGAAAGTTGCTCCGGTCAAAGAGAAGAAAACGTTACCGAAGCGTGCGGCGAAGGCAGCCCCTGCCCAGGAAGAGCTCCCGCGACCCTCCGCCGCCAAACCCGGACGTGTACGAGTTCGACGAACTAGAAGGCTCTCGGCCTCCCTCGGGCCTCCGCCGCCGCAACCAGCCCACCCCCGACCCCCCGCGCAGAGCCCCGAAAGCATACAATACATGGACATATGCCCTACAAGCTCTCAACTAGccaaaattaatacaaaaaaaaaagaagttgggAACGTACTTAGTGTCAGCTTGGTACCTGAGGACGATATATATAAGAAGCGGAAGAATTTGATAGATAATCTGACGAATAGTCCAGCGCTGTTAAACAAGATTTTCAACTCCTTACCGACAGAACTTCAGAACGAGCTTGGGAGCTTGGCCACGGAGGGGACTGGGCGGGAGGAGGCTTATTTGGACGAAAAAGCGGGGACGGTCTTAGAGGCACCCACGTACTATCCTACGGCTGAGGAGTTTGAGGATCCGATAAAATACTACGACAAAATCGCCCCCGAGGCCTCAAAATACGGCCTCTGCAAAATAGTTCCCCCTGAAAACTTCAAACCAACATGCACGATGAGCGACACGATCCGCTTCGCGGTCATATACCAGTACATCTCCAAGATGTTCAGCCGCTGGGGCCCCGTGTCCAGGGAGCTGGCTGCCATCAAGGCGCACCTGCGGACCCAGAGCGTCGTGTTCGCGCGGTCTCCCCTCTTGGACGGCAGCGAAGTGAACCTCCCCAGGCTATACCACGCCGTGGAACGCAACGGCGGTCTCAGCAACGTCATACAACGCAAGCGGTGGGGCCGCGTCGCCGACGAGATGAAGCTGACCAAGTTGCAGCACCCGGAGCGCAAGCTGGACCCCATATACATGCGATATCTGCTGCCCTACGCCACGTTGTCCGATCAGGAACGCCAAAGTATAATGGCGGAAGTGGAAAAATGCTGGACCACCAAGTACCAGAAGATGCTAGAACGGGCCCGCAATCCCTTCCAGCGTCAGAACCGGATGCTGGGCACcgagtgcgagtcggaatcTGACGACGAAGGAGAGGATGGaaacacagctggtgcgctcCAAGAGGCagaggactgcatagtgcaggggcgcacaatgaacctcgtcacattcaaaAAAGTAACTCAGAATCTGTCGACGAAGTGGAAGATGGCtacacagctgATCGCGACGTCGCTCATGGACGCGCACTTCGACCCGTCCAAGCAGCCGCCGGGCGCCGTCGACGTCGAGAAGGCGTACTGGCGCGCCGTGCTGCTTGGCACCGAGCACATCGTGGCCAACACGGCGTCCATAGACACGGGAGAGGAGGGTTATGGTTTCCCGAAGGACCCGCAGGCCGACTACGGCGCGCACCCCTGGAATCTCAAGGTaggtttctaa
- Protein Sequence
- MPCAMCRASRSLKSLSDISSDIIWLGTPPGWTATPEFQDPQSEGDLVREKEIMDENIRKELEEIRFEVSDKREMKSKKSSEKNNVSDNEDSGIDVQAKKNQNTNKAKTDKDSEKAGQKHERDKEDKKAGHKEGKKVGHKDDRDKEGKKVEQQDERDKEGKKVGHKDDRDKEDKNTGQIDEGDNIEKKAGQSGEGDKLEKKAGHKNKRDKEDKKAGEKHKRENDDISKPDDATKRIKGKGVGKKTVQKETRGRKPKVAPVKEKKTLPKRAAKAAPAQEELPRPSAAKPGRVRVRRTRRLSASLGPPPPQPAHPRPPAQSPESIQYMDICPTSSQLAKINTKKKEVGNVLSVSLVPEDDIYKKRKNLIDNLTNSPALLNKIFNSLPTELQNELGSLATEGTGREEAYLDEKAGTVLEAPTYYPTAEEFEDPIKYYDKIAPEASKYGLCKIVPPENFKPTCTMSDTIRFAVIYQYISKMFSRWGPVSRELAAIKAHLRTQSVVFARSPLLDGSEVNLPRLYHAVERNGGLSNVIQRKRWGRVADEMKLTKLQHPERKLDPIYMRYLLPYATLSDQERQSIMAEVEKCWTTKYQKMLERARNPFQRQNRMLGTECESESDDEGEDGNTAGALQEAEDCIVQGRTMNLVTFKKVTQNLSTKWKMATQLIATSLMDAHFDPSKQPPGAVDVEKAYWRAVLLGTEHIVANTASIDTGEEGYGFPKDPQADYGAHPWNLKVGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411193;
- 90% Identity
- iTF_00411195;
- 80% Identity
- -