Cfag013990.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- stc
- Assembly
- GCA_963556715.1
- Location
- OY750799.1:2062540-2075583[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00012 1.5 10.0 10.5 1 18 72 89 72 90 0.98 2 10 1.4e-05 0.17 13.0 11.1 1 19 131 153 131 153 0.88 3 10 3 3.7e+04 -4.7 2.2 6 10 183 187 183 187 0.94 4 10 0.17 2.1e+03 -0.1 11.4 1 11 193 203 193 204 0.94 5 10 0.12 1.4e+03 0.4 0.3 4 10 208 214 207 216 0.92 6 10 1.9e-06 0.023 15.7 15.2 3 19 222 238 220 238 0.91 7 10 0.0011 13 6.9 13.2 8 18 283 293 277 294 0.79 8 10 3.8e-08 0.00047 21.1 16.4 1 17 330 348 330 354 0.83 9 10 8.3e-05 1 10.5 6.5 1 14 360 372 360 372 0.97 10 10 0.54 6.7e+03 -1.7 0.6 5 12 407 414 403 414 0.67
Sequence Information
- Coding Sequence
- ATGTCTTACTACGAGAAACAAAACGCAGGATATATGGATGGAACGGAACGCACACACTCGTCCCGTTTTGATGATGTAGAACATACCGGAATCGTGGTGGCTCCATCTATGTGCCACTGCCCAGCCGCGGCGTCGCGCTCCGTGCCGTGCTGCGCGGGCACGGGGTCGTCCTCGACGTGGTCGTGCGGCGCGGCGTGCGCGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCGCTGCCACGCCCCGCCCTGCGCGCCCTGCGCGCTGCTGCCCGCCAGAGTGCTCACCTGCCCCTGCGGACGGACCGAATTACCTAAAGACAAGCGCAAGTCTTGTACAGACCCGATACCATTGTGCGGGAATATCTGCGCCAAGCCGCTCGCGTGCGGCCCGGAAGGCGACAGGCACTTCTGCAAACTGGAGTGCCACGAAGGCGCTTGCCCCGTGTGTCCGGACAAAACGCTGTTGCCGTGCCGCTGCGGGCACTCCAGCCGCGAGGTGCCCTGCTCCGAGCTTCCACAGATGTTGGACAATGTCTTCTGTCAGAAGAAATGCAATAAGAAACTGTCCTGCGGCCGTCACCGCTGCCGCGACTGCTGTTGTGCCGCCGCCACACACCGCTGCGGTGTCGTGTGCGGCCGCACGCTGGCCTGCCAGCTGCACCGCTGCGAGCAGTTCTGCCACACCGGCCACTGCCCGCCCTGCACCCGCGCCAGTTTCGAAGAGCTGAGCTGCGAGTGCGGCGCCGAGGTGATCCTCCCCCCGGTGCCTTGTGGAGCCAAGCGgcccgcgtgcagcgcgccgtGCCGCCGGCCGCGCGCCTGCGGCCACCCCGCGCTGCACGCCTGCCACTCCGGCCCGTGCCCGCCCTGCGTCGTGCTCACGGCCAAGCGCTGCCACGGTCAACACGAGGAACGCAAGACGATCCCGTGCTCGCAAGAAGAGTTCTCGTGCGGTCTGCCGTGCGGCAAACCTTTACCTTGCGGCAAGCACACTTGCCAAAAGACGTGCCACAAAGGCCCGTGCGACGCCGGCAAATGCACTCAGCCATGCAACGAGAAGCGTCCAAGCTGCGGGCACCCCTGCGCGGCTCCGTGCCACTCGGGCGACAGCGACAAAGGTGACAAGGGCGACAAAGCTGACAAGCCAGCTTGTCCGAGCAGCGCGCCGTGCCGCAAGCTTGTGCGAGCTACCTGCCCGTGCGGGAGGCGGACTGCCGAGCGATCGTGTCATGAGAACGCTCGAGATCTAGCCAAAATAATGAGTGCGCTGGCCGCGTCGAAGATGCAAGAAGGCGGTTCTGTGGATTTGTCGGAAGTTCAGCGCCCCGCCGCCATGCTCAAAacACTGGAATGCGACGACGAGTGCCGCGTGGAGGCGCGCACGCGGCGCCTCGCGCTGGCGCTGCAGATCCGCAACCCGGACGTGTCGGCCAAGCTGCAGCCGCGCTACAGTGACCACGTGCGCGCGCTCGCCGCCCGCGAGCCCGCCTTCGCGCGCCAGGTGCACGACAAGCTCACCGAGCTGGTGCAGCTCGCCAAGAAGCAAGACTTTTTAGGCTATAGTTCGCAAGAAATCTTAGTccctcgaacgatattagataGTCGTCAAGAGATACCGCACCCTCCTCCTAGCCGTCGACAAGAGATACCGCACCCTCGTATCCGTCGACAAGAGATAACCCCTCCTCCTAGCCGTCGACAAGAGATACCGCACCCTCGTATCCGTCGACAAGAGATAACCCCTCCTCCTAGCCGTCGACAAGAGATACCGCACCCTTGTAGCCGTCGACGAGAGATAACCCCTCTTCCTAGCCGTCGACAAGAGATACCGCACCCTCGTAGCCGTCAACAAGAGATAACCCCTCCTCCTAGCCGTCGACAAGAGATACCGCACCCTCCTAGTCGTCGACAAGAGATAACCCCCGCTCCTAGCCGTCGACAGGAGATACCGCACCCTCGTATCCGTCGACAAGAGATAACCCCTCCTCCTAGCCGTCGACAAGAGATACCGCACCCTCGTATCCGTCGACAAGAGATAACCCCTCCTCCTAGCCGTCGACAAGAGATACCGCACCCTCGTATCCGTCGACAAGAGATAACCCCTCCTCCTAGCCGTCGACAAGAGATACCGCACCCTCGTATCCGTCGACAAGAGATAACCCCTCCTCCTAGCCGTCGACAAGAGATACCGCACCCTCGTATCCGTCGACAAGAGATAACCCCTCCTCCTAGCCGTCGACCTGAGATACCGCCCCCTCCTAACCCACGACCTGAGATACCGCCCCCTCCTAACCCACGACCTGAGATACCGCCCCCTCCTAACCCACGACCTGAGATACCGCCCCCTCCTAACCCACGACCTGAGATACCGCCCCCATCTACCCATCGCCAAAAATAA
- Protein Sequence
- MSYYEKQNAGYMDGTERTHSSRFDDVEHTGIVVAPSMCHCPAAASRSVPCCAGTGSSSTWSCGAACARVLACGAHVCRARCHAPPCAPCALLPARVLTCPCGRTELPKDKRKSCTDPIPLCGNICAKPLACGPEGDRHFCKLECHEGACPVCPDKTLLPCRCGHSSREVPCSELPQMLDNVFCQKKCNKKLSCGRHRCRDCCCAAATHRCGVVCGRTLACQLHRCEQFCHTGHCPPCTRASFEELSCECGAEVILPPVPCGAKRPACSAPCRRPRACGHPALHACHSGPCPPCVVLTAKRCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCQKTCHKGPCDAGKCTQPCNEKRPSCGHPCAAPCHSGDSDKGDKGDKADKPACPSSAPCRKLVRATCPCGRRTAERSCHENARDLAKIMSALAASKMQEGGSVDLSEVQRPAAMLKTLECDDECRVEARTRRLALALQIRNPDVSAKLQPRYSDHVRALAAREPAFARQVHDKLTELVQLAKKQDFLGYSSQEILVPRTILDSRQEIPHPPPSRRQEIPHPRIRRQEITPPPSRRQEIPHPRIRRQEITPPPSRRQEIPHPCSRRREITPLPSRRQEIPHPRSRQQEITPPPSRRQEIPHPPSRRQEITPAPSRRQEIPHPRIRRQEITPPPSRRQEIPHPRIRRQEITPPPSRRQEIPHPRIRRQEITPPPSRRQEIPHPRIRRQEITPPPSRRQEIPHPRIRRQEITPPPSRRPEIPPPPNPRPEIPPPPNPRPEIPPPPNPRPEIPPPPNPRPEIPPPSTHRQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -