Cfag032463.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:7111538-7121127[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0005 0.032 15.7 3.5 1 23 802 825 802 825 0.96 2 12 0.00046 0.029 15.8 0.9 2 21 833 852 832 857 0.93 3 12 0.00033 0.021 16.2 0.6 1 23 865 888 865 888 0.95 4 12 0.0012 0.08 14.4 3.0 1 23 894 917 894 917 0.97 5 12 1 64 5.3 0.3 3 11 928 936 927 939 0.88 6 12 1 64 5.3 0.3 3 11 976 984 975 987 0.88 7 12 1 64 5.3 0.3 3 11 1024 1032 1023 1035 0.88 8 12 1 64 5.3 0.3 3 11 1072 1080 1071 1083 0.88 9 12 1 64 5.3 0.3 3 11 1120 1128 1119 1131 0.88 10 12 1 64 5.3 0.3 3 11 1168 1176 1167 1179 0.88 11 12 1.6e-05 0.001 20.4 1.5 3 23 1216 1236 1215 1236 0.98 12 12 0.027 1.7 10.2 0.4 1 23 1242 1265 1242 1265 0.95
Sequence Information
- Coding Sequence
- ATGAAGATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGCGGGTGTTCGTGGCTCGCATGAAGTGCCACATGCTGTGAGTACCGAGGACCGCTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTTGAACCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCCCAGTGCGGCAAGGGCGTGTTCATGGCTCGCCTGAAGTGCCACATGCTGTGAGTACCGAGGACCGCTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTGGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCCCAGTGCGGCAAGGGCGTGTTCATGGCTCGCCTGAAGTGCCACATGCTGTGAGTACCGAGGACCGCTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTGGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGTATGAAGTGCCACATGCTGTGAGTATCGAGGGGCACTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTTGAACCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGCCACATGCTGTGAGTATCGAGGGCCACTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTGGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGCCACATGCTGTGAGTATCGAGGGCCACTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGTCACATGCTGTGAGTATCGAGGGCCACTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGCCACATGCTGTGAGTATCGAGGGCCACTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGTATGAAGTGCCACATGCTGTGAGTATCGAGGGCCACTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGCCACATGCTGTGAGTATCGAGGGGCGCTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGCCACATGCTGTGAGTATCGAGGGCCACTCTGTAAGGTTCCAGCACCTACACTGTATGAAGATACTTGAACCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGCCACATGCTGTGAGTATCGAGGGGCGCTCTGTAAGGTTCCAGCACCTACACTGTATGAAAATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGGCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGTCACATGCTGTGAGTATCGAGGGCCACTCTGTAAGGTTCCAGCACATACACTGTATGAAAATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCCCAGTGCGGCAAGGGCGTGTTCATGGCTCGCCTGAAGTGCCACATGCTGTGAGTACCGAGGACCGCTCTGTAAGGTTCCAGCATCTACACTGTATGAAGATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCCTGAAGTGTCACATGCTGTGAGTATCGAGGGCCACTCTGTAAGGTTCCAGCACATACACTGTATGAAAATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCCCAGTGCGGCAAGGGCGTGTTCATGGCTCGCCTGAAGTGCCACATGCTGTGAGTACCGAGGACCGCTCTGTAAGGTTCCAGCATCTACACTGTATGAAGATACTTGACCCACGTGCGCGGTCACGGCCGCGAGCCCTGCCCTCAGTGCGGCAAGGGGGTGTTCGTGGCTCGCATGAAGTGCCACATGCTGTGAGTATCGAGGGTTGCTCTGGAAGTACGCATAAGGACGTCGACCGGCCATTTAAGTGCTCAGAGTGTGACAAGAGTTTCAAGATCAAACAACACCTCTACTCGCACGTCACTCGAGTGCATTCACCCaAGGATGACGTGATGTATTGCGCACAATGTGACAAGCAGTTCAAAAATAGTTACTCATACAATAATCACATGAAATACGCGAGCGAACATATTTCCAAGGGACTGCTCACGCATAGCTGCACAGAGTGTAGTCGAGTGTTCCCGAACAGGGGCCTGCTGCGTCAGCACGTGGCGCGCGTGCACAGAGACGAACGGAAATACGAGTGCCAAGTCTGCCACGAgATGTTCAAATCCTCGTCGACTCGGGCGCGGCACCGGCGGCTGACGCACGAGAACTATGTGGCACCCCGAGACAAGATATGCGACCACTGCGGGAAGGGTTTCAAGGTGAACATTTGTAGTTTAATGTCTGGCAGACCGAGCTACATGTGCCAGTCCTCGTCGACCCGGGCGCGGCACCGGCGGCTGACGCACGAGAACTATGTGGCACCCCGAGACAAGATATGCGACCACTGCGGGAAGGGTTTCAAGGTGAACATTTGTAGTTTAATGTCTGGCAGACCGAGCTACATGTGCCAGTCCTCGTCGACCCGGGCGCGGCACCGGCGGCTGACGCACGAGCACTACGTGGCACCCCGAGACAAGATATGCGACCACTGCGGGAAGGGCTTCAAGGTGAACATCTGTAGTTTGATGTCTGGCAGACCGAGCTACATGCTCCAGTCCTCGTCGACCCGGGCGCGGCACCGGCGGCTGACGCACGAGCACTACGTGGCACCCCGAGACAAGATATGCGACCACTGCGGGAAGGGCTTCAAGGTGAACATTTGTAGTTTAATGTCTGGCAGACCGAGCTACATGTGCCAGTCCTCGTCGACCCGGGTGCGGCACCGGCGGCTGACGCACGAGCACTATGTGGCACCCCGAGACAAGATATGCGACCACTGCGGGAAGGGCTTCAAGGTGAACATTTGTAGTTTAATGTCTGGCAGACCGAGCTACATGTGCCAGTCCTCGTCGGCCCGGGCGCGGCACCGGCGGCTGACGCACGAGAACTATGTGGCACCTCGAGACAAGATATGCGACCACTGCGGGAAGGGCTTCAAGGTGAACATTTGTAGTTTAATGTCTGGCAGACCGAGCTACATGTGCCAGTCCTCGTCGACCCGGGCGCGGCACCGGCGGCTGATGCACGAGAACTATGTGGCACCCCGAGACAAGATATGCGACCACTGCGGGAAGGGCTTCAAGGATAAAAATACCCTCTCGGATCATATCAACACGCACACAGGCGCACGCCCGTTCGTGTGCGCGCTGTGCGGGGCGGACTTCGGGCACAAGAGCGCCCTCTACCTGCACGGACGGTACAAGCACAAGATACCGATGAAAAACAATAGGCTTAAGAAAGTTGATGCGAAGACTaaagacacagaataa
- Protein Sequence
- MKILDPRARSRPRALPSVRQAGVRGSHEVPHAVSTEDRSVRFQHLHCMKILEPRARSRPRALPPVRQGRVHGSPEVPHAVSTEDRSVRFQHLHCMKILDPRARSRPRALPPVRQGRVHGSPEVPHAVSTEDRSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSYEVPHAVSIEGHSVRFQHLHCMKILEPRARSRPRALPSVRQGGVRGSPEVPHAVSIEGHSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSPEVPHAVSIEGHSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSPEVSHAVSIEGHSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSPEVPHAVSIEGHSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSYEVPHAVSIEGHSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSPEVPHAVSIEGRSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSPEVPHAVSIEGHSVRFQHLHCMKILEPRARSRPRALPSVRQGGVRGSPEVPHAVSIEGRSVRFQHLHCMKILDPRARSRPRALASVRQGGVRGSPEVSHAVSIEGHSVRFQHIHCMKILDPRARSRPRALPPVRQGRVHGSPEVPHAVSTEDRSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSPEVSHAVSIEGHSVRFQHIHCMKILDPRARSRPRALPPVRQGRVHGSPEVPHAVSTEDRSVRFQHLHCMKILDPRARSRPRALPSVRQGGVRGSHEVPHAVSIEGCSGSTHKDVDRPFKCSECDKSFKIKQHLYSHVTRVHSPKDDVMYCAQCDKQFKNSYSYNNHMKYASEHISKGLLTHSCTECSRVFPNRGLLRQHVARVHRDERKYECQVCHEMFKSSSTRARHRRLTHENYVAPRDKICDHCGKGFKVNICSLMSGRPSYMCQSSSTRARHRRLTHENYVAPRDKICDHCGKGFKVNICSLMSGRPSYMCQSSSTRARHRRLTHEHYVAPRDKICDHCGKGFKVNICSLMSGRPSYMLQSSSTRARHRRLTHEHYVAPRDKICDHCGKGFKVNICSLMSGRPSYMCQSSSTRVRHRRLTHEHYVAPRDKICDHCGKGFKVNICSLMSGRPSYMCQSSSARARHRRLTHENYVAPRDKICDHCGKGFKVNICSLMSGRPSYMCQSSSTRARHRRLMHENYVAPRDKICDHCGKGFKDKNTLSDHINTHTGARPFVCALCGADFGHKSALYLHGRYKHKIPMKNNRLKKVDAKTKDTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -