Basic Information

Insect: Cydia fagiglandana
Gene Symbol: ush
Assembly: GCA_963556715.1
Location: OY750794.1:2997311-3005665[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.018 1.1 10.8 0.2 1 20 119 138 119 140 0.93

2 9 0.00015 0.0097 17.3 0.9 1 23 178 200 178 200 0.98

3 9 0.21 14 7.4 0.4 3 20 231 248 230 250 0.92

4 9 0.051 3.3 9.4 3.6 2 21 489 508 488 509 0.93

5 9 0.021 1.3 10.6 0.2 2 20 536 554 535 556 0.90

6 9 2.1 1.4e+02 4.3 0.0 2 23 584 605 583 605 0.94

7 9 0.015 0.95 11.1 1.3 1 23 611 633 611 633 0.99

8 9 0.51 32 6.2 1.0 1 23 670 693 670 693 0.96

9 9 0.32 20 6.9 0.7 2 20 725 743 725 745 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.018	1.1	10.8	0.2	1	20	119	138	119	140	0.93
2	9	0.00015	0.0097	17.3	0.9	1	23	178	200	178	200	0.98
3	9	0.21	14	7.4	0.4	3	20	231	248	230	250	0.92
4	9	0.051	3.3	9.4	3.6	2	21	489	508	488	509	0.93
5	9	0.021	1.3	10.6	0.2	2	20	536	554	535	556	0.90
6	9	2.1	1.4e+02	4.3	0.0	2	23	584	605	583	605	0.94
7	9	0.015	0.95	11.1	1.3	1	23	611	633	611	633	0.99
8	9	0.51	32	6.2	1.0	1	23	670	693	670	693	0.96
9	9	0.32	20	6.9	0.7	2	20	725	743	725	745	0.92

Sequence Information

Coding Sequence: ATGGAAACGTGCGGCAAAAACGTTGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCAGGAGAACCTCGCACGCCGAGCTCGGGGGGAGAGCGGGCCGCGTCGAGCGGCGGCGCGTCGCCCGCGTCGGCGTCGGCGGGCTCCCCAGCCGCCTCGCCGCCGCGCCTGCGCCTCAACACGAGCCTCGCCACTGACCCCGCGCTGGCGCCCTCCGCCGCGCCGGTTAAGCGCGAGCTCCCGTCGCCCTCTCCCCCGCCGCCGCCTGCAACGACGCAAGCGCAAGCCAGGGACTACCTCGCTCTAACAGCGGCGGCGTTCCCTGCACTCTTCCCGGTCGCTCCGACCGGCTACATGTGCCAGCCATGCGGCATCCGCTATTCTTCTCTAAGCACGCTACAAGCGCACCAGGAGCACTACTGCTCGAACAGGCGGCCGAAACCTTCAGAATCTGTGGAACCGGGCGCTGATGCCGCAGGAGATGAATCCAGTAGCGATGCAAAGACTCCGAGACGTACAGGAAAGCAATATGCTTGCACCTACTGCTCGTATAGCGCTGATAAGAAAGTCAGCCTTAACAGACATATGCGCATGCATTCGTCATCTCCAGTCAGCAGCGGAACCCCTGCCCCGACCCCGACTTCTAACGGGGAAGCTACCGAAGGCCAACCGTCGCCCGATCGGTACTGCGCTGACTGTGACATAAGGTTCAGCTCGATCCAAACGTATAGAGCTCATAAAACACATTACTGTAGCACGAGACAGGTGGTGAAACCTGCTGCAGCTTCAGCCAGAGGAAGTTCTGTAACCTCAGGATCTGCGCCTCCATCTCCTGGAGCCACACCACCTGCCCAGAACCAATATGCGCTAGCCCTGCCTACTAATCCTATACTCATCGTCCCGTATTCACTGCTGCGGGGCGCGAGCACCCTCCCGGGCACAACTCTACCAGATCCCGACACGCCGTGCTTTTTACTGCCAAACGGCACATTTCAACCGCTCAGCCGAGCTATACCAAATATGAATTCCGATGGAAAAGAAGCCGAAGTTTTAAAATCAGCGAATCGGCCTCGGGAATCTTTGAAAGATGGTGGTACCCCTTTGGATTTAAGCGTGCGGCGGACTCCTGAATCCGTTGGTACTGATGAGCATGAGAAAGAAAATAGGCTGCGATCCGCGACGCCTGAACAGATTGTCTGCGCGCCGTCACTCCCAGGTTCTCCAGGCACGCCGTCGCCGCAGCGTCGATCATCATCTCCTACAGGAGAGAGCTCACCAAAGCGCCGACGACGAGACTCCAGAGGGCCAACGCCAAAGCCGCCAAGCGTTCCCTCCCCACCCGAGGGCAAATTCATCCCCGTACCCCCTGCAATCCTACCGCCAGCCCTGGCCATGCGTCTAGCCTCAGAACTGCCTCTGGCAGCCGCTTCCCCACAAGTTCTAGTCAAGCAAGGCGTGTCTAAATGCAAAGAATGCAACATCGTCTTCTGCAAATACGAGAATTATCGCGTGCATAAGCAACACTATTGTAACTCGGGCGGGGACGAGCGGGTGAGTCCTGCGCCTCCGGAGCCTGGACCACCGCCTCAGTACCGCCAGCTTTACTGTTTGGCTTGTGGGATCCACTTCAGTTCTTTAGACAACTTGGCAACGCATCAGAGCTATTACTGCACGAAGCGCGAGACGCGTTCACCTCGGTCTGTTCCTGAGGCTCCTAGGCCCGCATCTGGATCGGAGGGAGGGTGGAAGTGTCCGTGCTGCGACGTGGTATCGCCGACAGCGGCAGCAGCGCAGCGCCATATGGAGGCACACGCAGGCGTCAAGGCCTTCCGCTGCACCATCTGCCGTTACCGCGGTAACACACTGCGCGGGATGCGTACACACATACGAATGCACTTCCCGAAGAAGCCTGCTGATTTGCAGGAAGAGAGCTACATAGCCTGCGTGGTCGAGGAAGACAGCCGCGAAGCCACTTCTCCCGCCCCCGCCGTAGGGGAGCGCGTGCACCGCTGCAGCTCGTGCGCATACACCTCCACCTACCGGGGTAACGTCGTCCGCCACGCCCGCCTAGTCCACGCCACCGATGAACCAGAAACAGAGGAAACATCCCCCATACCCGCCGTCGACATAAAAAAAGAACCGGCAGATACAGAAGAAGAAACACCCAACTACTGCAAATCTTGCGACATTTCGTTCAAATATGTCAACACTTATAAGGCGCATAAGCAGTTTTATTGCACGGCAAATAACCAGGATGCCGCGGCAAATAACAATGTGCCGGCGGCGCTGCCAACCGCGCGGGTTAACGAAGTGCTTTGA
Protein Sequence: METCGKNVGEDEEWGNESEAMPGEPRTPSSGGERAASSGGASPASASAGSPAASPPRLRLNTSLATDPALAPSAAPVKRELPSPSPPPPPATTQAQARDYLALTAAAFPALFPVAPTGYMCQPCGIRYSSLSTLQAHQEHYCSNRRPKPSESVEPGADAAGDESSSDAKTPRRTGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEATEGQPSPDRYCADCDIRFSSIQTYRAHKTHYCSTRQVVKPAAASARGSSVTSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRGASTLPGTTLPDPDTPCFLLPNGTFQPLSRAIPNMNSDGKEAEVLKSANRPRESLKDGGTPLDLSVRRTPESVGTDEHEKENRLRSATPEQIVCAPSLPGSPGTPSPQRRSSSPTGESSPKRRRRDSRGPTPKPPSVPSPPEGKFIPVPPAILPPALAMRLASELPLAAASPQVLVKQGVSKCKECNIVFCKYENYRVHKQHYCNSGGDERVSPAPPEPGPPPQYRQLYCLACGIHFSSLDNLATHQSYYCTKRETRSPRSVPEAPRPASGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFPKKPADLQEESYIACVVEEDSREATSPAPAVGERVHRCSSCAYTSTYRGNVVRHARLVHATDEPETEETSPIPAVDIKKEPADTEEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDAAANNNVPAALPTARVNEVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_01073106;
80% Identity: -