Cfag032618.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:9255207-9270964[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.36 23 6.7 0.2 1 23 197 220 197 220 0.94 2 11 0.024 1.6 10.4 3.4 1 23 227 249 227 249 0.97 3 11 0.06 3.8 9.2 0.8 1 23 253 276 253 276 0.97 4 11 0.00064 0.041 15.3 0.9 1 23 304 326 304 326 0.98 5 11 0.0026 0.17 13.4 1.4 3 22 338 357 337 361 0.90 6 11 0.00014 0.0089 17.4 1.1 1 23 402 424 402 424 0.98 7 11 0.027 1.7 10.2 0.3 3 21 434 452 432 457 0.89 8 11 0.00053 0.034 15.6 0.4 1 23 465 488 465 488 0.90 9 11 0.034 2.2 9.9 7.2 1 23 494 517 494 517 0.95 10 11 0.00023 0.015 16.8 2.1 3 23 526 547 524 547 0.91 11 11 0.49 31 6.3 5.0 1 23 553 576 553 576 0.98
Sequence Information
- Coding Sequence
- ATGTCCTTCTCTGCGGTAGTCTGCGGTGACACTATAgatcccagatatttaaacgaCTCCACCTGCTTGAGTGGGACTCCTTCGATACACGGCGGTGCAGTGGTATATAAACCAGAGGAGCATGTGCCTGAGTGGTTGTGTTGGGAGTGTGAGGCGCAGTTGCGGCGCTTCACGAAGTTTAAACAGCAAGTTTCACATAGCTTTAATATTTTGCGGACATATGATATGCAGAAACATGACGTGAAACTCCCGTACCTGAAACCAAAATTAACCATTCACAAGCTTACGAACATAAATGTTCCCGAAATCCCTCCTGAACCAGAGACAGACATAGAGTTACCAATAACATATGAATACGAAACCACTGACGTGCCTCAAGATGATATCAAACTcgaaaatcaaatcaaatccgaAATTGACTCGCATTCAGACAACGATGATTTACTTATAAACTACGTACAGAAAAAGAAGAAGGTTAAGAAAAAGAGAAAGAAACCTGAATTGTTTAAAGAGATAGAACTGACGGAGACGGAGATAGAGGGAGAGAGACGTGAGATGGAGTTGAGCTTTGAGTATGTGCATGCAATGTTCCGGTGTGAGAAGTGTATAGTCTCCTTTCCTAATGCGGAGATGATGAAGGAGCATGAGTCAGTGAAACATGAACAGAACGCGGCACGCCACAGATGTCCAATTTGCACGTGCTCCTTCGTGTCCGAGATATCGTACAACTACCACGCGAACAAACACAGGCGGCGCTACGAGTGTAGTGTTTGCCAGGCTCGGTTAAGAAGCAAGCGGGCTGCGCAGAAACATTATACTACCACCCATGGAATTGAACCAAGTCCAGAGAAAGCTCAGGTTGAGGATGTTTCAATCACTAATACAAACGGTGTAAAGTCTGAAGTCACGTTCCCTTGCGAGCTGTGCGCGAAGACGTTCAAATGGAAGACGTCATTAAGGAAGCATTTGGAGACGCATCGCATAGAGGCCGGGCAGAAACGGCGGCCGTATTGCGAGCCCTGCAAAATGTCGTTCACCACGACTTCCAACCTCCAGAAGCACGTCAAGACCAGCTCCAAACACCAGATCCAGTTGAAACTCAGAAAGCTAGAAGACACGGTACCAGAAGAGTCAACGACACCAGAGAAGCAGCGCGCTCTGGTAGAAGAGATCAAGTGCTcggtggcggcggcgcgccagcTGTACCCGTGCGCGCACTGCGGCCGCCGCTTCCAGTGGCGCGGCAACCTGCTGCGGCACATGCAGAGCCACGCCGCCAGGGCCAACGGCGAGCTGGTGTGCGCGCCGTGCAACAGGACCTTCTCGTCGGTGGCCACCTACAAGCAGCACATGCGGCTGTCTAGAGCACACGTCTCCGAACAGGACTTTCCCCACGCGTGCGACGAGTGCGGGCGGCGCTTCGCCAACAAGACGCGGCTGCAAGACCACGTCGACTGGGACCACAGGAGACACTTCGCGCACCACTGTACACAGTGCCAGAAGGTATTCAAGAGCCACACGTCCCTGTACCTCCACAAGCAGGTGGTCCATAAGAAGGAGCACGCGGAACATCTCTGCGACCACTGCGGGAAACCATTCCCGAACCACGCGAAGCTCCGCAGCCACATAATAGCGCTCCACACGTCCGAGTCCCCCTACAAGTGTACCTCTTGCGCGATGCGTTTCAGCTGGCACTCGTGTCTATCGCGCCATGTACGGAGAGTGCACAAGCGCAAGTGA
- Protein Sequence
- MSFSAVVCGDTIDPRYLNDSTCLSGTPSIHGGAVVYKPEEHVPEWLCWECEAQLRRFTKFKQQVSHSFNILRTYDMQKHDVKLPYLKPKLTIHKLTNINVPEIPPEPETDIELPITYEYETTDVPQDDIKLENQIKSEIDSHSDNDDLLINYVQKKKKVKKKRKKPELFKEIELTETEIEGERREMELSFEYVHAMFRCEKCIVSFPNAEMMKEHESVKHEQNAARHRCPICTCSFVSEISYNYHANKHRRRYECSVCQARLRSKRAAQKHYTTTHGIEPSPEKAQVEDVSITNTNGVKSEVTFPCELCAKTFKWKTSLRKHLETHRIEAGQKRRPYCEPCKMSFTTTSNLQKHVKTSSKHQIQLKLRKLEDTVPEESTTPEKQRALVEEIKCSVAAARQLYPCAHCGRRFQWRGNLLRHMQSHAARANGELVCAPCNRTFSSVATYKQHMRLSRAHVSEQDFPHACDECGRRFANKTRLQDHVDWDHRRHFAHHCTQCQKVFKSHTSLYLHKQVVHKKEHAEHLCDHCGKPFPNHAKLRSHIIALHTSESPYKCTSCAMRFSWHSCLSRHVRRVHKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409704;
- 90% Identity
- -
- 80% Identity
- -