Cfag029130.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750812.1:12841201-12852759[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00045 0.029 15.8 2.0 1 23 34 56 34 56 0.98 2 14 7.9 5.1e+02 2.5 3.2 1 23 63 85 63 85 0.91 3 14 0.13 8.4 8.1 0.3 1 23 89 112 89 112 0.88 4 14 0.014 0.91 11.1 1.6 3 13 120 130 119 131 0.89 5 14 4.5 2.9e+02 3.3 0.4 1 9 130 138 130 148 0.88 6 14 0.04 2.5 9.7 1.9 3 12 159 168 158 168 0.92 7 14 0.13 8.4 8.1 0.3 1 23 169 192 169 192 0.88 8 14 0.04 2.5 9.7 1.9 3 12 200 209 199 209 0.92 9 14 0.13 8.4 8.1 0.3 1 23 210 233 210 233 0.88 10 14 0.022 1.4 10.5 2.2 3 13 241 251 240 252 0.89 11 14 0.84 54 5.5 0.6 1 23 251 274 251 274 0.87 12 14 1.3e-05 0.00086 20.6 2.9 3 23 282 303 281 303 0.94 13 14 1.7e-05 0.0011 20.3 0.1 2 23 309 331 308 331 0.95 14 14 0.0002 0.013 17.0 0.3 1 23 344 366 344 366 0.94
Sequence Information
- Coding Sequence
- ATGACGGAATGCGAGATAGAAACAATCTACATAACCCGAGAGCAATGCTTCGAGGAGCGCGCGCGCATGGCGCTCGACCAGCGCTACCTGGCCTCCACGTACAAGTGCACCGACTGCATAAAAGGGTTCAACTATAAGGCGAGCTTCCAGAAACACCTGGAAAAGCATAGCCAGAGCAATGGCGATTATGAATGTGAAGTATGTAAACAGAGAATGAGTACAGAAGATAAGCTGCTCTGTCACAAGAAATACCACGAAAGACGGTACCGCTGCCCCGTATGCGGCCTGACTCGGGTCAGTCGACTGACAGTCAAGGACCACTACTCGGCCTTCCACTCGGCCAGCCATCACAGGCACTGTCCACACTGCGGGAAAACTttcaaACGGTACCACTGCCCCGTATGCGGCCTGACTCGTCGACTGACAGTCAAGAACCACTACTCGGCCTTCCACTCGGCCAGCCATCACAGGCACTGTCCACACTGCGGGAAAACTttcaaACGGTACCGCTGCCCCGTATGCGGCCTGACTCGGGTCAGTCGACTGACAGTCAAGGACCACTACTCGGCCTTCCACTCGGCCAGCCATCACAGGCACTGTCCACACTGCGGGAAAACTttcaaACGGTACCGCTGCCCCGTCTGCGGCCTGACTCGGGTCAGTCGACTGACAGTCAAGGACCACTACTCGGCCTTCCACTCGGCCAGCCATCACAGGCACTGTCCACACTGCGGTAAAACTttcaaACGGTACCACTGCCCCGTCTGCGACCTGACTCGGGTCAGTCGACTGACAGTCAAGGACCACTACTCGGCCTTCCACTCGGCCAGCCATCACAGGCACTGTCCGCACTGCGGGAAAACTttcaaACGCCAGGTGTCGTGGCGGAAGCACGTCGCGAGCGTGCACGGCCGCGCGCGCGTCACGTGCGCCTACTGCGGGAAGAGCTACGCCAACAGAGACGTGCTCAAGGCGCATATGATTGTTCGACACCCGACAGAAGTGTCGGCGGGTGAGGTGGCCAAGTCCCACGTGTGCCAAGAATGCGGGATGGCCTTCAAGGCTCCCTCGCAGCTCAAGATACATAGCGTCAAGCATTCACTCTCCAGGGATTATTACTGTGTGGAGTGCGACAAGTAA
- Protein Sequence
- MTECEIETIYITREQCFEERARMALDQRYLASTYKCTDCIKGFNYKASFQKHLEKHSQSNGDYECEVCKQRMSTEDKLLCHKKYHERRYRCPVCGLTRVSRLTVKDHYSAFHSASHHRHCPHCGKTFKRYHCPVCGLTRRLTVKNHYSAFHSASHHRHCPHCGKTFKRYRCPVCGLTRVSRLTVKDHYSAFHSASHHRHCPHCGKTFKRYRCPVCGLTRVSRLTVKDHYSAFHSASHHRHCPHCGKTFKRYHCPVCDLTRVSRLTVKDHYSAFHSASHHRHCPHCGKTFKRQVSWRKHVASVHGRARVTCAYCGKSYANRDVLKAHMIVRHPTEVSAGEVAKSHVCQECGMAFKAPSQLKIHSVKHSLSRDYYCVECDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -