Basic Information

Insect: Cydia fagiglandana
Gene Symbol: PRDM7
Assembly: GCA_963556715.1
Location: OY750798.1:19184281-19189786[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00021 0.014 16.9 2.0 1 23 358 380 358 380 0.98

2 8 0.039 2.5 9.7 1.6 1 23 395 418 395 418 0.96

3 8 0.00015 0.0096 17.3 0.8 1 23 423 445 423 445 0.98

4 8 5.6e-06 0.00036 21.8 1.6 1 23 451 473 451 473 0.99

5 8 1.3e-05 0.00084 20.7 2.2 1 23 479 501 479 501 0.99

6 8 8.8e-07 5.6e-05 24.4 1.5 1 23 507 529 507 529 0.99

7 8 0.0002 0.013 16.9 2.7 1 23 535 558 535 558 0.95

8 8 0.0061 0.39 12.3 4.7 1 23 564 586 564 586 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00021	0.014	16.9	2.0	1	23	358	380	358	380	0.98
2	8	0.039	2.5	9.7	1.6	1	23	395	418	395	418	0.96
3	8	0.00015	0.0096	17.3	0.8	1	23	423	445	423	445	0.98
4	8	5.6e-06	0.00036	21.8	1.6	1	23	451	473	451	473	0.99
5	8	1.3e-05	0.00084	20.7	2.2	1	23	479	501	479	501	0.99
6	8	8.8e-07	5.6e-05	24.4	1.5	1	23	507	529	507	529	0.99
7	8	0.0002	0.013	16.9	2.7	1	23	535	558	535	558	0.95
8	8	0.0061	0.39	12.3	4.7	1	23	564	586	564	586	0.98

Sequence Information

Coding Sequence: ATGAGCGGTTTCACCCTCAGGAAGCGCGCTCGCGTATGTTACTACGAGCCGGACGAGCCGCCCTTCGATGAATTTATCTACTGCTCCGAGTGCCGGGACTATGTGTATGAGTACTGCGCAATACACGGCCCGTTACTTGTTATACCCGATGACAAGGTGCCCGCCGTGACGGGGCTCCCCGCGTTCGTGCCGCGCGCCGCGCTCACCGTCCCCAGAATCTTCCTGCATCTTGCCTACTCACATATCCCAGGGGCGGGAATAGGCGTGTTCAGCACGCTGACGCTGCCCAGCGGCGTGCGCTTCGGGCCCTACCGCGGCCGCCGCCTCAAGACCGCGCTCGACTCCGGATACGAATGGCAGCTGTACGACCGCAACAACAGGCCGAGCCACGTGGTGGACGCGAGCGACGGCAACAACTCCAACTGGATGCGCTACGTGAACTGCGCGCGGCGCTACTCCGAGCAGAATCTGGTCGCCTTCCAGTACCAGGGCGAGCTCTACTACAGGACGGTGAAGATCGTGCCGCGCTTCACGGAGCTGCTGGTGTTCTACGGCAGCGAGTTCGCAAACCGGCTCGGCGTCGACCTGCGCCGCTACACCAAACCCTGCGACTGCGAATACTGCCAAGAACGACCTGGTGCCAAAAAGGAACCAGAGAAAATAAACAAAGGAAATACGTCGAATGAAAAGAAGAACGAAACAGATATTAAAGATGATAGTTCAGGACAAGCTAAACTTGACACTAAAAAAGAATCTGCGAAAagaaagaaacgtaaaacgcgTAATGAAAATAAGAAAGAGACAAGAGATGTTAGTTCAGGTCAACCTAAACTTGTCACCGAAACGACAAGACAAACAAACGCGAAGACAAACAAACGTAAAATGCGTAACGAAAAGAAGGAAGAAACCCAGATAAATGATAGTGTCACAAAAGATAGTCAAGTCGAAAAGATACAAGAGCCATCTTCGTCTCAAGCGGAATCACCAATGAGCATGGATGTACAAGAGATACCTCCTACAAAACCTGCTGTAAATGGATCCTCTAACACAACGGTATCGAATGCGAATAACTACAAATGTGACCAGTGTGTCAAAACGTTCGATATAAAGTCAGACTTAGAGAAACACGTACACTCTCACATTGCATTGGTAGATACTAACAGCTTAAGTTCAAGGAAGGAATTTACGTGTAAAAAATGCAGTAGCACATTTGATACTCGGCTGCTTCTACTGGAGCATGCGAAGAGCCGGCATGGCGTGAAGTACTTCATTTGCTCTGAATGTGAGTATGCAACTAGTAAGAAAGGAAATTTACAGACACATTCGAGAACTCATAGTGGCGAGCGGCCATTCAAATGTGGTCAGTGTAGCGCCGCCTTTTCCCGCAGCAGTACTTTACAAAATCACAAGAGAACACACACTGGAGATAAACCGTTTAAGTGTGGACAATGTAATGCCGCCTTTGCCGATTGCAGTAATTTACAAACTCACAAGAGAACACACACTGGAGATAAACCGTTCAAGTGTGGACAGTGTAATGCCACCTTTATCCAAAGCAGTAATTTACAAAGTCACAGGAGAACACACACTGGTCAGAAACCCTACGAGTGCAATATCTGTGACTACAAGACTACTCAGTCATGTAATCTAAAGACTCATCTAATGGCCCGGCACTCGGGCCAAAAGCCGTACTGCTGCGATTCGTGCACTTACAGGGGTGCTACTAGAAGTCATTTATGGAGTCACATGAAAACCCACCAGAAGCCGGCTTAG
Protein Sequence: MSGFTLRKRARVCYYEPDEPPFDEFIYCSECRDYVYEYCAIHGPLLVIPDDKVPAVTGLPAFVPRAALTVPRIFLHLAYSHIPGAGIGVFSTLTLPSGVRFGPYRGRRLKTALDSGYEWQLYDRNNRPSHVVDASDGNNSNWMRYVNCARRYSEQNLVAFQYQGELYYRTVKIVPRFTELLVFYGSEFANRLGVDLRRYTKPCDCEYCQERPGAKKEPEKINKGNTSNEKKNETDIKDDSSGQAKLDTKKESAKRKKRKTRNENKKETRDVSSGQPKLVTETTRQTNAKTNKRKMRNEKKEETQINDSVTKDSQVEKIQEPSSSQAESPMSMDVQEIPPTKPAVNGSSNTTVSNANNYKCDQCVKTFDIKSDLEKHVHSHIALVDTNSLSSRKEFTCKKCSSTFDTRLLLLEHAKSRHGVKYFICSECEYATSKKGNLQTHSRTHSGERPFKCGQCSAAFSRSSTLQNHKRTHTGDKPFKCGQCNAAFADCSNLQTHKRTHTGDKPFKCGQCNATFIQSSNLQSHRRTHTGQKPYECNICDYKTTQSCNLKTHLMARHSGQKPYCCDSCTYRGATRSHLWSHMKTHQKPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -