Cfag031987.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:1429898-1446871[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.13 13.8 4.5 1 23 243 265 243 266 0.96 2 13 0.38 25 6.6 0.4 2 23 274 295 273 295 0.97 3 13 0.17 11 7.7 2.0 1 23 299 321 299 321 0.97 4 13 0.0054 0.35 12.4 1.4 1 23 326 349 326 349 0.92 5 13 0.21 13 7.5 0.2 2 23 355 377 354 377 0.91 6 13 0.0068 0.44 12.1 0.1 2 20 389 407 388 409 0.92 7 13 0.33 21 6.8 0.1 5 20 419 434 416 436 0.89 8 13 0.3 19 6.9 0.1 3 23 470 491 469 491 0.94 9 13 0.0061 0.39 12.3 0.4 2 23 497 519 496 519 0.95 10 13 0.0034 0.22 13.1 3.0 2 23 542 563 541 563 0.97 11 13 0.044 2.8 9.6 5.1 1 23 569 591 569 591 0.97 12 13 1.2e-05 0.00077 20.8 2.6 1 23 597 619 597 619 0.96 13 13 5.4e-05 0.0034 18.7 0.6 1 23 625 648 625 648 0.95
Sequence Information
- Coding Sequence
- ATGCGGTCGGTGAAAACTGAAAATGCTAGCAGCAGCGAACAATTACTAGCCTGCCGGGTTTGTTTAGCCACTGAAGCTAAGTTGTactatatttatgaaaatggaCTAGAAAAAGAAATTCTGGAGCTACTAGGGATCGAGGTGTCAGTGGTAGATGGGTATCCACAGCACATTTGTGCATTCTGCCGAGTACTTTTAGCAAAGTTTAAGAGGTTCCGAGCTTGCAGCCAACGGGCCCAGGAACTGCTGCGGACACTTAAGAAACAACATGGGATTAATACAAGCACCGTTGCTACCGTCAACTCTCCATTCCCAATCCTAACTATCCACACCACCACCCTCATAGAATACCAATACCAAGAACAACCAGAACCACCAGAACCCgtagtcaaagacgaagtagaATCCAAGCATGAAGATATAGTGAAATACGAAGATTTAGATAATAATTTAGATGTGGATGATAATATAGATTATGATGATGAGGAGTATAAGGAGGAAGTGGAAGTTAAGAAGAGGAAGCGGAAGAGGAGGGTTGAGAAGGAAGTTACGAGGGAGAAAAAGAAGTTACCTAAAGaaaagAAGATAAAGAAAATGTTCGACTGCGAGGCCGACTTCCCCGCGTTCGAGGCCAAATACAACATGGAAATAGTTGTGTTAACTATGGAGCAGCAGCTAGAAAACATGGCCGCCAGGAAGAACTCCTCCAACTATATCAACTCGCCGTATAAATGCCAGCTGTGCTTCAAAGGGTTTTCCTCTGAAGCTACTTTTAAGAATCATACTTTGAAGCATCATGACCCGAGTGTAGGAGCGCAGCAGTGCGAGCTGTGTTTCTCTCGTTTCCGTATCCCCGCGTTCCTGCGCACGCACGCCGAGACGCACCGCCTCAAGTTTGTCTGCAAGGACTGCCGCTTTGTCGCCAGTAATAGGTACCACGCTATTACGCACTTCCGCGAGCACAGCGGCTTCAAATACGTCTGCAAATATTGTGGAGCCAGTTTCAAGAAACCTTCGACACACGGCACGCACGTCCGTATCCAGCATCCCACCGAGAACACATCGTGCGACGTGTGCGGGGAGACCTTCCAGGGGGACTTCGGGCTGAGGATGCACAAGACTAGAGCGCACAAGCAGAACTCCGAGAACGAATCCGGCTCGCTGAACTGCAGCACGTGCGGCGTGCAGTTCGCCAGCTCGTACGCGCTGGCGCGGCACACGTTCACGGCGCTCGACAACGCTATCGACTGTATCACGTGCGGCGTGCAGTTCGCCAGCTCGTACGCGCTGGCGCGGCACACGTTCACGGCGCCCGACAACGTGTGCAACCCGAGCATGAGCTCGTACGCGCTGGCGCGGCACACGTTCACGGCGCCCGACAACGTGTGCAACCCGAGCATGAGaGCGTGTACTCTGTGCGGGGAAAACCTGGCGACCGATGAACTGCTGAGGAGCCATACTCAGGAGCGGCATAGCAAGCCGGAGACCAAGTGCGATGAGTGCAACAAGACATTCCTAACCGAGGCGTCTCTGAGCGTCCATTACGAACGCGTCCACCTCCAAGTGAAAAATGTGAGACGGAAAGCGTCGTACCAGGCCCGGAAACAGTACGGGGGAGTAGTCATGTGCGAGCTGTGCGGGAAGAGGTGTAAGAACAGCACCATCCTGAAATACCACCAGCGCACACACACAGGGGAGAAGCCCCACAGCTGCCCGCGGTGTCCCAAACGATTCGTCTCCCCCATGCTGCTACACTGCCACCTGCGGTCCCACACGGGGGAGCGACCGTACAAGTGCGCGCAGTGCCACAAGTCCTTCACGCAGAAGTCGGCGCTCACCGTACACAGCACGGTTCACACGGGTGAGAAACCATTCGCCTGCAGCATCTGCGGCAAGTCGTTCACACAAGCGGCCTCCGTTCACACGCACGTTAAGTATGTCCATATGAAGATGCCCGCGCCACCGCGCCGCCGGAACCTCAAGCGGGAGTAG
- Protein Sequence
- MRSVKTENASSSEQLLACRVCLATEAKLYYIYENGLEKEILELLGIEVSVVDGYPQHICAFCRVLLAKFKRFRACSQRAQELLRTLKKQHGINTSTVATVNSPFPILTIHTTTLIEYQYQEQPEPPEPVVKDEVESKHEDIVKYEDLDNNLDVDDNIDYDDEEYKEEVEVKKRKRKRRVEKEVTREKKKLPKEKKIKKMFDCEADFPAFEAKYNMEIVVLTMEQQLENMAARKNSSNYINSPYKCQLCFKGFSSEATFKNHTLKHHDPSVGAQQCELCFSRFRIPAFLRTHAETHRLKFVCKDCRFVASNRYHAITHFREHSGFKYVCKYCGASFKKPSTHGTHVRIQHPTENTSCDVCGETFQGDFGLRMHKTRAHKQNSENESGSLNCSTCGVQFASSYALARHTFTALDNAIDCITCGVQFASSYALARHTFTAPDNVCNPSMSSYALARHTFTAPDNVCNPSMRACTLCGENLATDELLRSHTQERHSKPETKCDECNKTFLTEASLSVHYERVHLQVKNVRRKASYQARKQYGGVVMCELCGKRCKNSTILKYHQRTHTGEKPHSCPRCPKRFVSPMLLHCHLRSHTGERPYKCAQCHKSFTQKSALTVHSTVHTGEKPFACSICGKSFTQAASVHTHVKYVHMKMPAPPRRRNLKRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00412867;
- 90% Identity
- -
- 80% Identity
- -