Cfag032616.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:9232976-9253877[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.57 36 6.1 0.6 1 23 208 231 208 231 0.97 2 18 0.23 15 7.3 0.2 2 23 239 260 238 260 0.97 3 18 3.1 2e+02 3.8 0.1 3 23 266 287 265 287 0.93 4 18 0.19 12 7.6 2.7 1 23 294 316 294 316 0.97 5 18 9e-05 0.0058 18.0 0.2 3 23 323 344 321 344 0.96 6 18 5.7e-05 0.0036 18.7 2.3 1 23 351 374 351 374 0.97 7 18 0.35 23 6.7 6.9 6 23 385 402 381 402 0.91 8 18 0.02 1.3 10.6 0.6 1 23 413 436 413 436 0.92 9 18 1.9e-05 0.0012 20.2 2.1 1 23 442 465 442 465 0.96 10 18 0.00086 0.056 14.9 1.4 2 23 475 496 474 496 0.97 11 18 0.017 1.1 10.9 2.6 1 23 502 525 502 525 0.95 12 18 2.5 1.6e+02 4.1 1.5 1 23 915 938 915 938 0.97 13 18 0.0019 0.12 13.9 5.8 1 23 999 1021 999 1021 0.98 14 18 0.00011 0.0072 17.7 1.2 2 23 1026 1048 1025 1048 0.96 15 18 0.00057 0.037 15.5 0.9 1 23 1055 1078 1055 1078 0.97 16 18 0.1 6.4 8.5 1.5 3 22 1086 1105 1085 1109 0.88 17 18 1.3 82 5.0 0.1 8 23 1164 1180 1163 1180 0.94 18 18 0.72 47 5.7 1.8 3 22 1188 1207 1187 1211 0.88
Sequence Information
- Coding Sequence
- atgGACGATATGTCCCATTTAAATATGCCAGGGTTTAGCGGAGGGCCAAATTTCTCGAGATCGACAACAGTACTGAATACCTGCATTTGTTGTTTGGCTATAAACGTTCCGCTTGTGAAACTAACAAATTGTAAACACGTAGAGTATTTTGAATGTGTCTTTGAATTTAAGTTAGAGTATGCAGCAAGTTTTGTCTGCTATGCATGTCATGGCACACTCAAGGATATTTACCAATTCAAGCGACAGGTggaagatagtctttcaaatcTTAACAAACAGGTTAATAACGTAGATCGTAACAACACAAAACTTTCTAAACTCACACAAGCCGACATAGAAATATTCCATACACAGAACTCAGAGCCCATTGAAAAAGAAGTCATCAAACCAAGCAGCTACATGGAAATAAAAACAGAAGTTAAAATCGAAGTCGAACAGGAATACTCGGACCTTGAGAATGATGTCCCGTTATCCGAGATTAAagaaaaagagaaagatcctaATACTCCGTTCTTCATACACAAGCATCGAGGAAAGATTAAACTTGTCACGTTAAATGAAGAAGAAATGTGGGAAGAAAGGAGAAGAGAAGCGGTCAAGGAAAAGTATTTGAAATTGCTGTATAAGTGTGAGAGTTGCATAGTCGGGTTTGACCATGAGCCGAGTTTGAAAGAGCATATGGAAAAGAGACATACTGAGACAAGCGGAAGTACTACATGTGCGATATGTAAGTCGGTGCTTATTTCTGTAGCGTCCTATAAGGAACACATGAGACGGCACTATCGGAGGGTAGACTGTGGGGTGTGCGGGGCGCGCTACAATACGGTCACGTCTGCGCAGTCGCACTACGACAAGATGCATGCGACTTCACCCACTAAATACAAGTGCGAGCAATGTGGACACACTACAACTTCGGACCGCGGCATGCGCTACCATCGTGAATCGCACAAGACGGGTAGAGTGAACTGCGACAAATGTGATAAAGACTTCGTGAACAACACCGGGCTCAGGGTGCACATGTACACAGTCCACAAAGTCTCCAATCGCACGTACTCTTGCAAAGTGTGCTCCAAAACGTACCGGCAGCGCTCCGGCCTCCACTCGCACATGGAGTCCGCGCACGGGGCCCACGGCGGGGCCTACTGCGCGCCGTGCCGCACGCACTTCCGCACCGAACACAATCTGAGGCACCACCTCAATACGCACAGCAAACACACCAATGAGAGTGATAAAAAATTCGTATGTACCGTGTGCGACGCTCGCTTCATATTGAGGTGCCAGCTCAAAAACCATGTCGACTGGGTGCACCTCAAAAACAACAGGCATACGTGCGATGAGTGCAGTAAGGTATTCAAGAGCCAGCCTAAGCTGCGTCGCCATATAAACTACGTTCACGAGAAGAAGAGGCCTCCGCGAAACAAGATGTGCGACCACTGCGGCCGCGGGTTCACGACAATGGCGATCCTGCGCTCGCACATCCGCACGCACACGGGCGAGCGGCCGCACTCGTGCGCGCACTGCCCCGCCACCTTCGCGCACTCCGCGGCCCTCTACACGCACACCAAGCTGCTGCACACACAGAAAACTACTTTAGAGTACCTAGCAAATTTTGTCTGCTATGCATGTCATGGCACACTCAGGGATATTTACCAGTTCAAGAGACAGGTGGAAGATAGTCTCTCAAATCTTAAGAAACAGGTTAAAAACTTAAATCGGAACAACACGAAACTTTCTAAACTCACACAAGCTGATATAGAAATATTCCATACTCAGAACTCAAAGCCCCTTGAAAAAGAAGtcatcaaaataaaaaatgaagTTGAAATTGAACAAGGATACTCTGAAGAAAAAGTTAGAGGTCCTATAACACCATTCTTCTTAAATCGGAATCCGGAAAATGATATCCCATTATGGACGATTAGTGAAAAACATAGAGATCCTAATTCTCCATTCTTCTCAAATATGGGTCCGGTTATTGTCCCATTACCGCCCAAAGGTCCCAATATTTCATTCTTCTCACATCCAACCAGGATCCAGGATCCCAGCATTATCCCAATACCGATGATTCAACATCCCAATATTTCATATTTCCCACATGTGGATCCACAATCTCTGGAGATTGTCCCACCGGTGATTCAAGAGAGACTTAAAGATCCTGATATTTCATTCCTCTCAAGGGATCTGGTGACCGATGACCCATTATGGGTGAGTACAGCGAGACATAAAGATCCTAATACTCCATTCCTTTTACATAGGGCTCCGGAGAATAATGTCCCATTACAGGGGATGACAGAAAGCAATACTGATCCTAACATTTCACACTTCTCACATATGAATCCGGAGAATAATGTCATTAATGTCCCATTACAGGggattacagaaaacaatactgATCCTAACATTTCACACTTCTCACATAGTGCTCAGGAGAGTGTCCCATTACAAGGGATTACAGTGAACAATACAGATCCTAACATTTCACACTTCTCACATAGTGCTCAGGAGAGTGTCCCATTACAAGGGATTACAGTGAACAATACAGATCCTAACATTTCACACTTCTCACATAGGGCTCAGGAGAGTGTCCCATTACAAGAGATTACAAAAAAAGCTACAGATCCTAATACACCCTACTTTCGAAAGAAGTATCAAGGAAAGATTAAATTAGTGGACTTAAATGAGGAGGAAATGTGGGAGGAAAGGAGAAAAGACGCGGCGAAAGAGAGGTATTTGAAATTGCCGTACAAATGTGAGAGTTGTATCCATGGGTTTTCCCTTCAGCCGCATTTGGAAGGACATATAGAGAGGAAACATACTGAGACAAGCGGGAGTGTCCCGTGTGCGATATGTAAGGTGTTCACCCCCGTGGCACTTTTAGAGGCACACGTGAAACGGCACTATAGGAGGGTCGACTGTGGCGCGTGCGGGGCGCGCTACAACTCGCAAAATGCAGCAGAGGCGCACTACGGCAAGATGCACGAAACTTCACCTAAACACAAGTGCGAGGAATGTGGACATACCTCAaaTTCGCTCCGAAATTTGCGCCGTCATCGTCAGAAGCACGAGGGCAAAGTGAGCTGCGAGCATTGTGGGAAAGAATTCGTCACCAAAATGGGCCTCAAAGACCACGTCAAGAAATATCACAAACCCTCAAACCGCACGCATACCTGCCCCAAATGCTCCAAAGTGTACCGGGCGAGTGCCAGCTTCCTAGCTCACTTGAAGACAGCGCACGGGGCCGACGGCGGGGCCTACTGCAGGCCGTGCGACGCGCACTTTAGCACCAAGGGGAGCCTCAGAATCCACCTGAAGACGAGCAGCAAACATACCAATGAGAACGATAAAAACACCAAGCGGAGCCTCAAAATCCACCTGAAGACGAGCAGCAAACATACCAATGAGAACGATAAAAAGTTAGTAGAGTTTGTTGACACTATTCCTCGCCAGTGGGGCGACGGCGACACTcctttcgggcattctcggaacaAAAAAGTGTACCGGGTGAGTGCCAACTTCCTGGCTCACTTGCGGACCGCGCACGGGGCCGACGGGGGGGCCTACTGCAGGCCGTGCGACGCGCACTTTAGCACCAAGCTGAGCCTCAAGATCCACCTGAAGACGAGCAGCAAACATACCAATGAAAATGTGTGA
- Protein Sequence
- MDDMSHLNMPGFSGGPNFSRSTTVLNTCICCLAINVPLVKLTNCKHVEYFECVFEFKLEYAASFVCYACHGTLKDIYQFKRQVEDSLSNLNKQVNNVDRNNTKLSKLTQADIEIFHTQNSEPIEKEVIKPSSYMEIKTEVKIEVEQEYSDLENDVPLSEIKEKEKDPNTPFFIHKHRGKIKLVTLNEEEMWEERRREAVKEKYLKLLYKCESCIVGFDHEPSLKEHMEKRHTETSGSTTCAICKSVLISVASYKEHMRRHYRRVDCGVCGARYNTVTSAQSHYDKMHATSPTKYKCEQCGHTTTSDRGMRYHRESHKTGRVNCDKCDKDFVNNTGLRVHMYTVHKVSNRTYSCKVCSKTYRQRSGLHSHMESAHGAHGGAYCAPCRTHFRTEHNLRHHLNTHSKHTNESDKKFVCTVCDARFILRCQLKNHVDWVHLKNNRHTCDECSKVFKSQPKLRRHINYVHEKKRPPRNKMCDHCGRGFTTMAILRSHIRTHTGERPHSCAHCPATFAHSAALYTHTKLLHTQKTTLEYLANFVCYACHGTLRDIYQFKRQVEDSLSNLKKQVKNLNRNNTKLSKLTQADIEIFHTQNSKPLEKEVIKIKNEVEIEQGYSEEKVRGPITPFFLNRNPENDIPLWTISEKHRDPNSPFFSNMGPVIVPLPPKGPNISFFSHPTRIQDPSIIPIPMIQHPNISYFPHVDPQSLEIVPPVIQERLKDPDISFLSRDLVTDDPLWVSTARHKDPNTPFLLHRAPENNVPLQGMTESNTDPNISHFSHMNPENNVINVPLQGITENNTDPNISHFSHSAQESVPLQGITVNNTDPNISHFSHSAQESVPLQGITVNNTDPNISHFSHRAQESVPLQEITKKATDPNTPYFRKKYQGKIKLVDLNEEEMWEERRKDAAKERYLKLPYKCESCIHGFSLQPHLEGHIERKHTETSGSVPCAICKVFTPVALLEAHVKRHYRRVDCGACGARYNSQNAAEAHYGKMHETSPKHKCEECGHTSNSLRNLRRHRQKHEGKVSCEHCGKEFVTKMGLKDHVKKYHKPSNRTHTCPKCSKVYRASASFLAHLKTAHGADGGAYCRPCDAHFSTKGSLRIHLKTSSKHTNENDKNTKRSLKIHLKTSSKHTNENDKKLVEFVDTIPRQWGDGDTPFGHSRNKKVYRVSANFLAHLRTAHGADGGAYCRPCDAHFSTKLSLKIHLKTSSKHTNENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -