Cfag002222.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750790.1:35505386-35506852[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00051 0.033 15.7 0.4 1 19 149 167 149 169 0.97 2 9 0.25 16 7.2 8.9 1 23 190 212 190 212 0.98 3 9 7.2e-06 0.00046 21.5 0.8 5 23 221 239 218 239 0.96 4 9 4.2e-06 0.00027 22.2 3.5 1 23 245 267 245 267 0.98 5 9 0.00019 0.012 17.0 6.3 1 23 272 294 272 294 0.97 6 9 1.5e-05 0.00096 20.5 0.4 1 23 300 322 300 322 0.98 7 9 0.00018 0.012 17.1 1.9 2 23 329 350 328 350 0.97 8 9 5.2e-05 0.0034 18.8 0.7 1 23 356 378 356 378 0.99 9 9 0.00095 0.061 14.8 1.2 1 23 384 407 384 408 0.94
Sequence Information
- Coding Sequence
- ATGTGCCGCATATGTTTAATCAAAACAAAAGACCAcgctttaaatatttttgatgataatgaagAATCTAAAGAAATTCGTAGTAAGATATATACATGTTTTCAAATAAAACTAAGTCCTGAAAAGAACCTACCCAATGTGATGTGCGAGAATTGTATAGATGAATTGAATATAGCCTATAAATTTAGATTAAAGTGCTTAACATTTGAAGAGAAATATGGCAATTACCTTAAAGAAATTAAGGAAGAGACGGAATATTGtggtaatgttaataatttaaaggAAGTTGATAAATCTGAAGATGCCCCATTAGACACAACTGAGGATAATTACGATATTTATGATCATGATATCACATCAGATGATAAAATTAAGATTAAGTCAGAAACTGATGGTCATAGTCGAACATTTAATGTCTTTTCTCTTTCTGATACTcaaaataaatttcaatgcAGTATCTGTCATAAAGTATTGAGATCAAAGGTATCTCTAGCCAAGCATAATGTATGTATGCATCAGAAGCGTAAGCATGCAGGCAGAGTAACTGGCAGTGGAGCTTCAAGACGTTACCACTGTACTAAATGCCCATACCACACCCCCCACAGCCAAACATTAGTGAATCATATGCACAGGCATGATGGGGTGAGGCCGTACCAATGTGAATGTGGGAAGAGTTTTACACAGTCCTCTAGTCTAGCAGCACACCGCAAAACACACAGTCTTACTACATTCTACACCTGTTCCACATGTGGCAAGCAGTTTAAACATGCCTTTTCACTCAAAAAACACTTATTAGTCCATGAAAAAGGAAATTTCAACTGTGAAATTTGTCACAAAACTCTTAAAACAAAGAAAAGCCTGCAGGATCACATGCACCGACATTACAACATTCGCAACTACAACTGCGAAGACTGTGGAGATACTTTTGTTACTTCGTCCGAGCTGCAGAGCCATCGGTTAAAACATAGTTTGGAGAAGAAAGTTGAATGTCACTTGTGTGGATACAGAACTAATACCAAAAAGAGTTTGATAGTCCATCTGAAGAGGCACGCCGGCAACAAATCATTCAAGTGTGGCTCCTGCGACTTATCCTTCTACACTGGCGGGGACCTCCGCCGCCACCGGCGCGTCCACTCGCGCGAGAAGCCGTACCCGTGCCCAGCGTGCGCGGCGCGCTTTACGCACAGTTCGTCGCTTAACAAGCACGTGCTCAACTTGCACCACGTACAATACCGGTGGGCTGACTTCCATCCGCGGGACTCTAGGAAGATATTGGctaaataa
- Protein Sequence
- MCRICLIKTKDHALNIFDDNEESKEIRSKIYTCFQIKLSPEKNLPNVMCENCIDELNIAYKFRLKCLTFEEKYGNYLKEIKEETEYCGNVNNLKEVDKSEDAPLDTTEDNYDIYDHDITSDDKIKIKSETDGHSRTFNVFSLSDTQNKFQCSICHKVLRSKVSLAKHNVCMHQKRKHAGRVTGSGASRRYHCTKCPYHTPHSQTLVNHMHRHDGVRPYQCECGKSFTQSSSLAAHRKTHSLTTFYTCSTCGKQFKHAFSLKKHLLVHEKGNFNCEICHKTLKTKKSLQDHMHRHYNIRNYNCEDCGDTFVTSSELQSHRLKHSLEKKVECHLCGYRTNTKKSLIVHLKRHAGNKSFKCGSCDLSFYTGGDLRRHRRVHSREKPYPCPACAARFTHSSSLNKHVLNLHHVQYRWADFHPRDSRKILAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411809;
- 90% Identity
- iTF_00412778;
- 80% Identity
- -