Cfag032061.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:2138315-2160966[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0042 0.27 12.8 0.8 1 23 297 319 297 319 0.96 2 12 1.4 87 4.9 2.2 1 23 326 348 326 348 0.94 3 12 0.81 52 5.6 4.9 1 23 352 374 352 374 0.96 4 12 2.3e-05 0.0015 19.9 2.6 1 23 379 402 379 402 0.96 5 12 0.0021 0.13 13.8 0.1 2 23 408 430 407 430 0.94 6 12 1.1 72 5.1 0.1 1 21 441 461 441 466 0.91 7 12 0.037 2.4 9.8 0.2 3 23 472 493 471 493 0.94 8 12 0.0002 0.013 16.9 2.9 1 23 498 521 498 521 0.98 9 12 0.00024 0.016 16.7 0.3 1 23 541 563 541 563 0.97 10 12 0.00024 0.015 16.7 1.6 1 23 571 593 571 593 0.98 11 12 1.1e-05 0.00068 21.0 1.0 1 23 599 622 599 622 0.96 12 12 0.00029 0.019 16.4 0.2 2 23 630 652 629 652 0.93
Sequence Information
- Coding Sequence
- ATGGATCTACAAAATGTTGCCTCAAATGAGGATTCCTTGTTGGCCTGTAGAGCTTGTCTGATTACCGATTGTAAACTGTACAACATACATGATTATCAACTCGGTGGTGCCTTTGCTCGCATCTCAGGAGTCCCTGTGCACAAAGATGGGCTCCCGCAGCACCTCTGCATCTTCTGCAGCGCGCAGGTGGCCCGCTTCGAAGCCTTCCGAGAGAAGGTCCTCCGCTCACACTTTTGTATGAGGGCGAAACTATGCGAGAAAGAGTTGGATACAAACATTATCCGCACCATCGACCGCGCTCACTTCAAGCTTCTCAACAACCTAGCCTTCACCAAACCACAGACCCTCGAGTGCATAAACCTGAAGACCCCTGAGGACATCAAGAACGAACCCAACACAGACATCGATGACACTAAAGATAATATAGAGAAACAAGAtcttaaagaagaagaagacaatGATATAGAACTTGATAATGATCCAGTTGAGGATATATTCATCCTCACAGACGTGGAAAacattaaaaggaaaaaaagaaGAGTTACAGCTAAGAAAAAGATGAAACTTGAAAAATTTGACGACGACGATGACGTGAAACTTGTAAATTTTGCTAAAAAACGACCGAGGAAGAAAGAGGGCAATCAAAGTGTTGTTAAAAAGAGAGAAGTAAAAAGTAAAGATAGTTCGAAACCGAAAGTGAAGAAGGAAAGGAAGCCAAAAGAAGACAGTAAGAGGAAGTTTCGGAATCCGGAGAACGGTTACATGCCAGTGTTTGACTTTGCTACGTTTGAGAATGCTTTTGAAGTGCGTGTTGTCACTTTGAGTAAGGAAGACCAACTGGAGGAGATCGCTACACGCAAAGAGTCCGCCAACTACCTGGAGTCCCCATTCCAGTGTCACGACTGCGGGAAAGGGTTTCTGGCTGAGGAGGCCTACAACAACCATCAGTTGCGGCACAGCCCGAGTGCGGGCGGGTACGcgtgcgagatctgcaaggtccGCTTCAACATGCAGTGCCGCCGCCAGGAGCACCAGGACATGCACCGGCTCAAGTTCTTCTGCAAGAACTGCAGCTTCGTCTCCAGAAACAGgCATCAAGCGAGGAGGCATTACGACATGCACGCGGGCAAAACGTTCGAGTGCAAACATTGCGGGAAAATGTTCAATAAGAGTTCGACGTATTTGTCGCACGTGCGTCTGGCGCACCCAGACATGCACGTGTCGTGCGACCTGTGTGGCGAGACCTTTGTGGGGCAGGCGGGCCTCAAGCAGCACAAGGCCAAGATGCATTCCATAGCAGAGAACATAAAACCGCAGAAGTTCGAGTGTGGCACGTGTTCAGCCACCTTCCTTAGCGTAGAAGCACTGAACAGACACACGGACACGGCCGGCGAGCACGGAGCCCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGCAGGCGCTACAGGAACATGTCAAGGAGACACATCCGAAGGAAACGTATCGGTGTGAGGAGTGTAACATGTCGTTTAAACGCGCGTCGGCTTACGACCTGCACCACCGGCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCAcgtcCCGCCAAGGGCTGCGCTACCACTTGCGCGACCACAAGGGCCTCAACCTGAAGCTGTTCACGTGCCCCGAGTGCAACAAGACCTTCGCCGCGAAGCACATGAGAGATTGGCACATGCGTTCGCACACGGGTGAGAAGCCGTACCAGTGTCCCGAGTGCCCGCTCGCCTTCAGCCTCAACAGCAACTTCAAGAGGCACCACAAGGCGGTGCACCTCGGGCAGCGTAAAAGCATTCCGTGCAACATCTGCGGGCGCGTGTTCACGACGACGTCGTGCGTGCGCGTGCACGTGAACGCCGTGCACCGCGGCATGCCGTGGCCCAAGCGGAACCGGGCCCGCGGCAAGACCGACCCCAAGTCGCCGcttcacaataaataa
- Protein Sequence
- MDLQNVASNEDSLLACRACLITDCKLYNIHDYQLGGAFARISGVPVHKDGLPQHLCIFCSAQVARFEAFREKVLRSHFCMRAKLCEKELDTNIIRTIDRAHFKLLNNLAFTKPQTLECINLKTPEDIKNEPNTDIDDTKDNIEKQDLKEEEDNDIELDNDPVEDIFILTDVENIKRKKRRVTAKKKMKLEKFDDDDDVKLVNFAKKRPRKKEGNQSVVKKREVKSKDSSKPKVKKERKPKEDSKRKFRNPENGYMPVFDFATFENAFEVRVVTLSKEDQLEEIATRKESANYLESPFQCHDCGKGFLAEEAYNNHQLRHSPSAGGYACEICKVRFNMQCRRQEHQDMHRLKFFCKNCSFVSRNRHQARRHYDMHAGKTFECKHCGKMFNKSSTYLSHVRLAHPDMHVSCDLCGETFVGQAGLKQHKAKMHSIAENIKPQKFECGTCSATFLSVEALNRHTDTAGEHGALRPCEQCGENCASEQALQEHVKETHPKETYRCEECNMSFKRASAYDLHHRRKHLGQRFSAAGRHVARRTPGHFVCEQCGRVLTSRQGLRYHLRDHKGLNLKLFTCPECNKTFAAKHMRDWHMRSHTGEKPYQCPECPLAFSLNSNFKRHHKAVHLGQRKSIPCNICGRVFTTTSCVRVHVNAVHRGMPWPKRNRARGKTDPKSPLHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -