Basic Information

Insect: Cydia fagiglandana
Gene Symbol: prg
Assembly: GCA_963556715.1
Location: OY750790.1:34387203-34388977[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.3 84 4.9 3.6 3 23 175 196 174 196 0.88

2 10 0.18 12 7.6 0.3 1 23 202 225 202 225 0.95

3 10 1.8e-07 1.2e-05 26.5 0.5 1 23 231 253 231 253 0.97

4 10 6.5e-07 4.2e-05 24.8 3.0 1 23 259 281 259 281 0.99

5 10 0.0014 0.088 14.3 1.4 1 23 287 309 287 309 0.97

6 10 0.0014 0.092 14.3 0.5 1 23 315 337 315 337 0.95

7 10 0.004 0.26 12.8 0.7 2 23 427 449 426 449 0.94

8 10 5.2e-05 0.0033 18.8 2.9 1 23 455 477 455 477 0.96

9 10 8.5e-06 0.00055 21.3 2.2 1 23 483 505 483 505 0.98

10 10 0.0016 0.1 14.1 0.0 3 23 514 534 512 534 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.3	84	4.9	3.6	3	23	175	196	174	196	0.88
2	10	0.18	12	7.6	0.3	1	23	202	225	202	225	0.95
3	10	1.8e-07	1.2e-05	26.5	0.5	1	23	231	253	231	253	0.97
4	10	6.5e-07	4.2e-05	24.8	3.0	1	23	259	281	259	281	0.99
5	10	0.0014	0.088	14.3	1.4	1	23	287	309	287	309	0.97
6	10	0.0014	0.092	14.3	0.5	1	23	315	337	315	337	0.95
7	10	0.004	0.26	12.8	0.7	2	23	427	449	426	449	0.94
8	10	5.2e-05	0.0033	18.8	2.9	1	23	455	477	455	477	0.96
9	10	8.5e-06	0.00055	21.3	2.2	1	23	483	505	483	505	0.98
10	10	0.0016	0.1	14.1	0.0	3	23	514	534	512	534	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTATATAATAGCTAATTTCCACACGCTGTGTCGCTTGTGTTTGAACAAGAGCACTCTGACGGTGTCGATTTTTGGAGCCGCGCCTGATGATGAAACCAATTCGGCGCTAACCTCGAAAATCGCTGAAATTGCCGAACTTCAGatGGACCCTAATGATGGCCTACCTGGAAGAATCTGCTACAAATGCTTGTTTAAAGTAGATATATGTTCCAAATTTCGCCTTCAATGTATCCAGAATGAGACAAGACTGAGACAGATAACAGTTAGAGTGAATGAACAAGAGAATTCAAATTCTTCAGAGATGTCCAATTTCTACCCCACCACCCAAGATATGAACAAACAAGATTACATTGTAGAAGACAGTGTTGTTATGGTGGTAGATCCAAGCCTAGACTATGATTCCTCAGAGGAATCTGACAACGCAGATCAGCCCGATGCAGATGCCACAGAACGAAACAACACCCCTGACGGAGACCATATGCCAGAGTCATTCTTCAAAAATGTTGCCATGTGTCAGTATTGTGATCAAGCTTTTATTTCTCAAGATAAGTGTAAAGAACATGAGGTTACTTGCCATGATCCTAACCTACCATTTAAATGTATAGAATGTAGCTTAGTCTTCCCTGAGCGAAACCAATATGTCCAGCATATCAAGCAAGTACATGGCACTGACAAGCCTTATCAGTGCCCCGAGTGTGACAAGTCCTTTGGCCGCAGATCAGATTTAAGGAAGCATTCAATAGTTCATACTGGCATCAGGCCATTTCAGTGCCAGTACTGTCTCAAAAGCTTCTCTCGTAACACAAATCTAAGCAAACATCTCAGGATACATGCAGGCACCAAGCCACATGTATGCCCTTTATGTCCAAGAAGCTTTGTGTGTCGCAATGACTTACAGCGCCATGTCCTAGTCCATTCCGGTATGAAACCATATGCTTGCCGAAAGTGCCCTTTGACATTTGGTAGAAGAGATAAACTAATCAAACATGAAGTCAGACATGGTCCTCTGAGTCCCAACCAAGTGCATGAAATAGATAATGAGCAGGAAACACATGACATGGTAGTCAACGTCAACCCTTACAGCAACTTACTGACTTCTCCCACTCACCAAGGTGCTGATTATGATCTCCCTCGAGTGCCAGACCACATTTCCGGTGTTAGTAgttttataaatcaaatacaTAAAACTCCTTCCACTTCAGGAAAGCTAACAACATCTCCACCGAAACCAAAACCAGTAGCAAATAAAAACAGgcctaaaaatataaaatgtcaccAATGTCCAAAAAAGCTATCCTCATTAGATGCATATAAGACTCATGTTTCAATAGCACACATTGGAAACAGAGGATTCCAATGCAAAATATGCTTCAAGAAATTTTCTCGCAAGAGAGAGCTGGACCGACATGTGACCCTTCACTCTGGAATGAAGCCTTTCTCATGCGGTCAATGTGATAAGAAATTCAACAGGAAAGACAAACTGAATAAACATGAGGAAACTCATGAATGCCTGGTTGTAAACATGCCTTGTATTGAATGTGGCCTCACTTTTGAGAAGAAAGCTGACTTAGTAGCCCACATTAAATCTCACTTCACTGACAATTTTGATGACAAGCCTGAGATAAAGAAGGAAGATGAGCCAGAGTTCCCAATAGATGACAACTATTATGACTTGGAGACCTGA
Protein Sequence: MEDSYIIANFHTLCRLCLNKSTLTVSIFGAAPDDETNSALTSKIAEIAELQMDPNDGLPGRICYKCLFKVDICSKFRLQCIQNETRLRQITVRVNEQENSNSSEMSNFYPTTQDMNKQDYIVEDSVVMVVDPSLDYDSSEESDNADQPDADATERNNTPDGDHMPESFFKNVAMCQYCDQAFISQDKCKEHEVTCHDPNLPFKCIECSLVFPERNQYVQHIKQVHGTDKPYQCPECDKSFGRRSDLRKHSIVHTGIRPFQCQYCLKSFSRNTNLSKHLRIHAGTKPHVCPLCPRSFVCRNDLQRHVLVHSGMKPYACRKCPLTFGRRDKLIKHEVRHGPLSPNQVHEIDNEQETHDMVVNVNPYSNLLTSPTHQGADYDLPRVPDHISGVSSFINQIHKTPSTSGKLTTSPPKPKPVANKNRPKNIKCHQCPKKLSSLDAYKTHVSIAHIGNRGFQCKICFKKFSRKRELDRHVTLHSGMKPFSCGQCDKKFNRKDKLNKHEETHECLVVNMPCIECGLTFEKKADLVAHIKSHFTDNFDDKPEIKKEDEPEFPIDDNYYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00149713;
90% Identity: iTF_01072823;
80% Identity: -