Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750814.1:1511312-1520763[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00015 0.0096 17.3 1.2 1 23 1160 1182 1160 1182 0.98

2 12 1.1 71 5.2 3.2 1 23 1188 1210 1188 1210 0.87

3 12 1.7e-05 0.0011 20.3 3.0 1 23 1216 1238 1216 1238 0.99

4 12 0.0015 0.098 14.2 1.5 1 23 1244 1266 1244 1266 0.95

5 12 0.14 8.8 8.0 3.4 1 23 1274 1296 1274 1296 0.98

6 12 0.00073 0.047 15.2 1.2 1 23 1302 1324 1302 1324 0.96

7 12 1.2e-05 0.00079 20.8 0.4 3 23 1332 1352 1331 1352 0.97

8 12 1.6e-05 0.001 20.4 2.1 1 23 1358 1380 1358 1380 0.98

9 12 0.082 5.3 8.7 2.5 1 23 1386 1408 1386 1408 0.98

10 12 0.11 6.8 8.4 0.3 1 23 1414 1436 1414 1436 0.94

11 12 0.00084 0.054 15.0 0.8 3 23 1444 1464 1442 1464 0.96

12 12 2.5e-07 1.6e-05 26.1 2.6 1 23 1467 1489 1467 1489 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00015	0.0096	17.3	1.2	1	23	1160	1182	1160	1182	0.98
2	12	1.1	71	5.2	3.2	1	23	1188	1210	1188	1210	0.87
3	12	1.7e-05	0.0011	20.3	3.0	1	23	1216	1238	1216	1238	0.99
4	12	0.0015	0.098	14.2	1.5	1	23	1244	1266	1244	1266	0.95
5	12	0.14	8.8	8.0	3.4	1	23	1274	1296	1274	1296	0.98
6	12	0.00073	0.047	15.2	1.2	1	23	1302	1324	1302	1324	0.96
7	12	1.2e-05	0.00079	20.8	0.4	3	23	1332	1352	1331	1352	0.97
8	12	1.6e-05	0.001	20.4	2.1	1	23	1358	1380	1358	1380	0.98
9	12	0.082	5.3	8.7	2.5	1	23	1386	1408	1386	1408	0.98
10	12	0.11	6.8	8.4	0.3	1	23	1414	1436	1414	1436	0.94
11	12	0.00084	0.054	15.0	0.8	3	23	1444	1464	1442	1464	0.96
12	12	2.5e-07	1.6e-05	26.1	2.6	1	23	1467	1489	1467	1489	0.99

Sequence Information

Coding Sequence: ATGTCTGAGAAGGAAACAGAGTCTATAGATGACGAAAAGAAGGTAGAAACAGTAATAGTTAAGAATGAGTTAGACTGCACTGAAGAAAAAGGCCAGCAACCATTGAAAGAAGTTACAGAACAGAAGGGAATGGAAGGAGAATCATCTGAAACAGTTCAGGTGAAGATGGAAATAGTGTGTGTAAAGTTTGATTTACTTTGGAATAGACTGAAGGGCGAGCTAGAAAAGCAGACCACTATTATTACCGACTCAGTCCACACATCCCTTTCCTTAGCATTTGATGAAAAACTAAAACCTATCATTCAAGAAAATGCAGAAATGAAAACAGAAAtagtaaaattaaaatctaCAGTGAAGCGATTAGAAATTGATGTCAGAAAAAATAACCTAATACTCTTTGGTGTAAAAGAAGAGGAAAACGAAAATATAGAACTTATGGACATAGTTTTGGCAATTCTGAATGATATCAATAAGAACTCGATAAAGTCCAACGATTGGGATAGGTGGGAGATCAGTGAAGTGCAAAGAATTGGGAAAAAGGAAGAAAAAAGAATCAGGCCAATAAAATTAGTACTCACCCTTGGCTGGAGAAAAATGGAACTCCTCAAAAACAGAAAGAATTTCCCTAAGAATATAAGTGTAACTGAGGACTTCCCAAAAGAGACCCTCGAAAAAAGGAAGGCTCTAATCCCAAAAATGTTAGAAGCCAGAGAATCTGGCAAGTACGCCATcattaaaaatgataaacttaTTGTGAAGGAGAAACGTGAAAAGAAAGAGAACAATGATAAAAGAAAACGGGTTCCATCTTCCCCACCCAAGACCCCCCCAAACTCAATCAAAAAACAATTAAACCACGGCAACCGAAGAACTCTCCCAAGCCGACTGGTCCTCGTGGGAGATAATGACCGCGACCCTCTAAACGGAACAAacgaagaaaaagaagaagcaaGTAAACTAAAAGGAACAAACACGGACATATATATAGCGACTCTGAACACGCGAACACTCCGGACCCCAGAAAAACTAACGGAGCTAGAACTGGCCATAGAAAATATGAAATGGGATATAATCGGGATCAGCGAAATGAGACGGTACGGAGAAGAAATTGAAGACAAAGGAAAGTATATAATGCACTACATTGGAGAAACCAAGGGACAGTTTGGTGTCGGTTTCCTGATCAAGAGTCACTGGGCAAACAAAATAGAAGAAATAAGGGGAATCAATGAGAGAATAGCACTCCTCAACATTAAACTTCCAACACATAACCATAGAGAAGAGATGTGGACCATCATTCAAGCTTATTCCCCAACTGAATCTGAAAACTCAGATCACAACACGAAGACGGACAAATTTTACGAAGATTTACAAGCAACCGTTCAAGACTCGTATAAAAACCTAATTGTGATGGGAGACTTCAATGGTCGAATAGGGGTTTGCAATGAAGGGGAAGAACAAATAATAGGAAAACATGGATATGGCCAAAGAAGTAGTAACGGAgaaagactagtcaattttgCATTAGAAAATAAACTTAGTATTTTAAACAGTTTCTTCAAGAAAAAGAAGACAAAAAAATGGACGTGGACATCACCCAATGGCAAATATAAAAACGagattgattttattttgaccAACAACCGAAAAATTTTCAAAGACTTGCATACAGTACAACAACTTAACTTCCATACAGACCACAAAATGGTAAGAGCATCACTGTCAACGAAGCAGAAACCAAAAAGAAGACATTTTCAGAATAAGTATAAAACTGCCTTGGTATTAACTGGAAACAAGGAGTCActtcttgaaaatttgaatacTACAATAAACAGACATGCGACCGTAAACTACAAGACGACTCAAGAACGATACGACAATCTTCTGGATATACTCAAAACGCAAATTGTTAATACAAATaatcaaaacaaacaaacagaaAATATACTATCTCCAGAAACTAAACAATTAATTACAAAGAGGAAAGAACTCTTAAAAGAAGGTAAAAACAAGCAAACTCGCGAAAAGATATCAGAAATAAGCAAACAGATACTCGTGCATATAAGACAAGATAGAAAAAATAAACGACTGAACCTTATCAAAACATCCATTGAAAAAACTGGAGGACTAAGGAAAGCATTAAAACGACTTGATAAAAAGAAAACGTGGATGCCAAACATCAAAAGCAGACAAGGAAAGTGTACAAGCAAAAGAGAAGATATACTAGAAATTGCCACAGACTATTACAGAATACTATACCAAAAACAAACAACACTACCGGAAGAATCCCAAATGGAAATATTCGCAGACACTGAACCAGTACCAAATATACTACAGGAAGAAACAATAAGAGCAATCAACACACAAAAACAAGATAAAGCACCAGGCTCAGACCAAATAACAAACGAGTTACTAAAACACACGTTACCAGTGATTGGACCAAGACTAACAGAAATATTCAACGACATCCTAACAACCGAAAGCATACCCAAAGATTGGATGAAATCAACTATAATACTAATACATAAAAAAGGAGACAAGGGAGACATGAGTAACTATAGACCAATAAGTCTAATGGCAAACATTTATAAGATATTTTCAAAGATAATACTATCACGTATCACGGTCAAACTCGAAGAAAATCAACCCAAAGAACAGGCGGGCTTTCGAAGCAAATTTTCCACGATAGACCACATCCACGTCCTAAGACAAGTGATCCAAAAATACAGGGAATATAATAAAGTCTATTACTTAGGATTCGTGGATTTTAATAAAGCATTCGATACCATATATCATGATAGCATCTGGAAAGCGCTAACAATACAGGGAGTAGAGCCCAAATACATTAGAATACTCAAAAACATTTACTCGAATAGTACGGCCCAAGTTAAGCTGGAAAGAACAGGGGAAGAATTTCCACTCGAAAGAGGAGTCAGACAGGGCGACCCAATCTCACCGAAATTATTCTCCGCGGTATTAGAGATGGTCTTTAGAAACTTGGAATGGGATCGAAATGGAATCAACATAAACGGCGAAAAACTTAACCACCTACGTTTCGCAGACGATATCGTCCTGTTTTCTGAAGATCCAAGTAACTTAGAAGAAATGTTACAACAGCTATCTGATGAAAGTGCCAAGGAGGAGCCACACTGGTACGGAGCGAGTGAGACTGAACAATCAGGCTTATACAGCAACCACACAACTGAAGATAGTGCAGTGCCCAGAACAGGGGCTACGCAGCGCCCTGGAGTAGCGTTTGGGAATGCTGCAATCAATGAAAACACTTGCAAACAAGAGCCGGTTGAAGAATTCATTGTGCCGGACCAATTAGGGTGCTCCAATTGGGGCCCCACAGACAACAGCATGTTACTACAGATAACCAGACTCTCCACGATGCACGAGGGAACTCTGTTCAGAAGGAGGTTCaaggaaagaaagaaaaaagggAAAGTTAACAATGACCTTGAAGAAACAGGGAAATATCAATGTGATCTATGCGACAAGAAATTCACAgtcaaaaaatatttgattgGTCATCTTAACTATCACAAGTATAAAAAACCGTTTCATTGCGGTATATGTAACAAAACGTTTTCGTGTGAAACTTACGCGTCTGCGCACGAGAGGATTCACACTGGTGAGAAACCATACAGTTGCAAGCTCTGCAATAAAGCCTTCAGGATCTCCAGCCATCTGATCAAGCATGAAAGAACTCATACTGAAAACAAGCCGTTCTCGTGTGAAGTTTGTAAAAAGCAATTTAGAGAGAAAACGCAACTGAAGCTGCATGAGCTTTTACACAAAGGGGAAGAGGCGAAACAGTATCCTTGCAAGTTTTGTCCAAAGAAATTTTTACATATGTATAAGCTGACGATTCATGAACGGAACCATACTGGGGTTAGGCCGTTCGCGTGTAAGACATGCGGGCAGAGCTTTGTCCAAAAATTCCAACTAGACAGTCATAACAGATTACACACAGGTGACCAACCGCGTATATGCGAAATTTGCGGCAAGCATTTTATAACAAAGGCGGACTTAGTAAGACACGAGCGCATACATACTGGAACCAAGCCGTACAGCTGCGACTTATGCCAGCGGCAGTTCTCCCAAAAAGCGCACTTAAACTCTCACATGTTAATTCACAGTGGGGAGAAACCCTACTCGTGCGAAACATGCTCAAAGAAGTTCAGCTGCAAACCCTCTTTGGTTATACACTCACGAGTCCACTCGAACGAGAGACCGTATCCTTGCAGGGTATGCGGGAGACAATTCAAACAGGGTGGCGTCAGAAGGAGGCACGAAGCGACTCACACGCGAGACAAAACCATAGCATGCGAAGTGTGTAACGAACATTTCGCCCTCAAAAGGGAGTTGAAGAAACACCAAAGAGGGCACTTGGTATACACTTGTGATATATGCAATAAGGTCTttagaaataaatacaattttaatagACATGTGCAGACGCATACTGAAGAAACTGAGGAAAACGAACAAAACTTAGAAGCCCCAgagtaa
Protein Sequence: MSEKETESIDDEKKVETVIVKNELDCTEEKGQQPLKEVTEQKGMEGESSETVQVKMEIVCVKFDLLWNRLKGELEKQTTIITDSVHTSLSLAFDEKLKPIIQENAEMKTEIVKLKSTVKRLEIDVRKNNLILFGVKEEENENIELMDIVLAILNDINKNSIKSNDWDRWEISEVQRIGKKEEKRIRPIKLVLTLGWRKMELLKNRKNFPKNISVTEDFPKETLEKRKALIPKMLEARESGKYAIIKNDKLIVKEKREKKENNDKRKRVPSSPPKTPPNSIKKQLNHGNRRTLPSRLVLVGDNDRDPLNGTNEEKEEASKLKGTNTDIYIATLNTRTLRTPEKLTELELAIENMKWDIIGISEMRRYGEEIEDKGKYIMHYIGETKGQFGVGFLIKSHWANKIEEIRGINERIALLNIKLPTHNHREEMWTIIQAYSPTESENSDHNTKTDKFYEDLQATVQDSYKNLIVMGDFNGRIGVCNEGEEQIIGKHGYGQRSSNGERLVNFALENKLSILNSFFKKKKTKKWTWTSPNGKYKNEIDFILTNNRKIFKDLHTVQQLNFHTDHKMVRASLSTKQKPKRRHFQNKYKTALVLTGNKESLLENLNTTINRHATVNYKTTQERYDNLLDILKTQIVNTNNQNKQTENILSPETKQLITKRKELLKEGKNKQTREKISEISKQILVHIRQDRKNKRLNLIKTSIEKTGGLRKALKRLDKKKTWMPNIKSRQGKCTSKREDILEIATDYYRILYQKQTTLPEESQMEIFADTEPVPNILQEETIRAINTQKQDKAPGSDQITNELLKHTLPVIGPRLTEIFNDILTTESIPKDWMKSTIILIHKKGDKGDMSNYRPISLMANIYKIFSKIILSRITVKLEENQPKEQAGFRSKFSTIDHIHVLRQVIQKYREYNKVYYLGFVDFNKAFDTIYHDSIWKALTIQGVEPKYIRILKNIYSNSTAQVKLERTGEEFPLERGVRQGDPISPKLFSAVLEMVFRNLEWDRNGININGEKLNHLRFADDIVLFSEDPSNLEEMLQQLSDESAKEEPHWYGASETEQSGLYSNHTTEDSAVPRTGATQRPGVAFGNAAINENTCKQEPVEEFIVPDQLGCSNWGPTDNSMLLQITRLSTMHEGTLFRRRFKERKKKGKVNNDLEETGKYQCDLCDKKFTVKKYLIGHLNYHKYKKPFHCGICNKTFSCETYASAHERIHTGEKPYSCKLCNKAFRISSHLIKHERTHTENKPFSCEVCKKQFREKTQLKLHELLHKGEEAKQYPCKFCPKKFLHMYKLTIHERNHTGVRPFACKTCGQSFVQKFQLDSHNRLHTGDQPRICEICGKHFITKADLVRHERIHTGTKPYSCDLCQRQFSQKAHLNSHMLIHSGEKPYSCETCSKKFSCKPSLVIHSRVHSNERPYPCRVCGRQFKQGGVRRRHEATHTRDKTIACEVCNEHFALKRELKKHQRGHLVYTCDICNKVFRNKYNFNRHVQTHTEETEENEQNLEAPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -