Cfag031899.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:758742-772003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.08 5.1 8.8 1.3 2 23 296 318 296 318 0.92 2 14 1.3 86 4.9 0.5 1 23 322 344 322 344 0.87 3 14 0.002 0.13 13.8 3.1 2 23 350 372 349 372 0.96 4 14 0.0067 0.43 12.1 0.0 2 21 381 400 380 401 0.93 5 14 0.0031 0.2 13.2 0.2 1 23 423 445 423 445 0.97 6 14 0.00052 0.033 15.6 0.4 1 21 451 471 451 472 0.93 7 14 0.00014 0.009 17.4 1.6 1 23 491 514 491 514 0.96 8 14 0.00052 0.033 15.6 0.4 1 21 520 540 520 541 0.93 9 14 0.00059 0.038 15.5 0.4 1 21 549 569 549 570 0.93 10 14 0.27 17 7.1 0.3 1 21 578 597 578 598 0.92 11 14 0.00059 0.038 15.5 0.4 1 21 606 626 606 627 0.93 12 14 0.00016 0.01 17.3 1.5 1 23 678 701 678 701 0.96 13 14 0.0001 0.0065 17.9 1.1 1 23 707 730 707 730 0.96 14 14 0.062 4 9.1 0.3 3 23 739 760 738 760 0.96
Sequence Information
- Coding Sequence
- ATGACTGCTATTAAATTAGAAACAGATGAGTTACTGGCGTGCCGCATTTGCCTGGCCACGGACTTGAAACTCTTCGGAATTATTGAGAGTAAACTGGAGGACGCATTTGCCGATATCCTGGGTACTCCTGTGTCATCTGGTGACGGACTGCCGGATCGCGTGTGCGGTTCGTGCCGCGCGGCGTTGTGGCGCAGCGCGGAGCTGCGCGCACGCGCCCGCGCGGCCGTCGACGTGTTGCGGCGGCTGCTACTGCAACAACATTATaTTACCACTGATGTCATCCGTGCTATCGACCGCACAACGCTTCGCATCGACGACAAGACACACATACTTACCGACTACCCCACACATACAGAATACCATGAAACTGACTACTGTCAGGACTCAGTCAGCGATCATGACGACAAAAGCGACGTAGATTTAGTTGAAAATAGTATGGTAGAAACAAAGGACGTGGTAGATAATGGTAGAAGTATAGAGGAAGTGAAAATAGTAGAAACGGAAGTGATGGTAGAAAATAGTAGAAATGAAGATGTGAAGAAAGAGAAGAGGAAAAGAATTAAGAATGAGAGGAAGAAAGTTATTAAGGTAAAAGCGAAACCGGAAGTGGAATGGGTGGTGAAAAAGAAGCCGGTGAGGAAGAAAAAAGGTTTTAAGCGATATTTCATGTGCGACGAGGATTATATCAAGTTTGAGGAGAAATACAACATACAGGTGATACGTCTATCGGAAGAGGAGCAGGCGGCCGAGATGGAGGCGCGGCGACACGCGGACAGCTACAGGAACGCGCTGATGCGCTGCGAGAGATGCTGCAAGGGGTTCTTGTCCGCCTTCACCTATGAGAACCATCTGAAGGTCCACGATCCGGCGGTGTCAGGCCCGAACGAGTGTCGGTGGTGCGGCTGCCGCTTCAAGTGGCCTAACAACCTTCGAACACACTTGATAGAGACACATCAACTCAAATACGTGTGCAAGCAGTGCCAACGCGTCGTTAAGGGAAGGCACGAGGCGCTGCTGCACGCGGAGTACCACGCGGGCAAGACGTGGGAGTGCGGACACTGTGCGCGCACTTTCAAGAAGAAGTCGACATTCTACACGCACGTGCGTATGAACCACGCGACGTCGGAGCCCGCCTCCAGCACTTGCGAGCTGTGTGGCGAGACCTTTAAGGGCCCGCCCGGACTGAAGCTGCATCAGATCAAAAAGTGCAACAAGAACATGAAGGCGcaggagacggcggcgccgacTATCGTGGCTAAAAAGGGCTTCATCTGCGAGGTCTGCGGTAAGAATTGTACGTCGCTGTCAATCCTGGCGGTGCACCTGCGGGCGCACACGGGCGACCGGCCGCACGCGTGCCCCGGCTGCCCGCTGCGGTTCGCCAAGAAGGACAACATGGAGAAACACCACCGAGTGgtgagtctgtctgtctgtctgtctgtctgtcagtcacACACGGGCGACCGGCCGCACGCGTGCCCCGGCTGCCCGCTGCGGTTCGCCAAGAAGGACAACATGGAGAAACACCACCGAGTGtcacACACGGGCGACCGGCCGCACGCGTGTCCCGGCTGCCCGCTGCGGTTCGCCAAGAAGGACAACATGGAGAAACACCACCGAGTGtcacTCACGGGCGACCAGCCGCACGCGTGCCCCGGCTGCCCGCTGCGGTTCCCCAAGAAGGACAACATGGAGAAACACCACCGAGTGtcacTCACGGGCGACCAGCCGCACGCGTGTCCCGGCTGCCCGCTGCAGTTCGCCAAGGACAACATGGAGAAACACCACCGAGTGtcagtcaCGGGCGACCAGCCGCACGCGTGCCCCGGCTGCCCGCTGCGGTTCCCCAAGAAGGACAACATGGAGAAACACCACCGAGTGgtgagtctgtctgtctgtctgtcagtcacACACGGGCGACCGGCCGCACGCGTGCCCTGGCTGCCCGCTGCAGTTCGCCAAGAGGGACAACATGGAGAAACACCACCGAGTGGTGAGTCTGTCTGTCAGTCACTCACGGGCGACCAGCCGCACGCGTGCCCCGGCTGCCCGCTGCGGTTCCCCAAGAAGGACAACATGGAGAAACACCACCGAGTGtcacACACGGGCGACCGGCCGCACGCGTGTCCCGGCTGCCCGCTGCGGTTCGCCAAGAAGGACAACATGGAGAAACACCACCGAGTGGTGCACCTGGGGCAGAGGCCGCAGGTGGCGTGCGGCGTGTGCGGCAAGCTGCTGGCGCACGCGGCGTCGCTCAAGCTGCACGTCCACACCGTGCACCTCAAGCTGCCCGCGccgccccgcgcgccccgcccgCCCCGGACCCGGAGGAAGGACAACACTTGTTAA
- Protein Sequence
- MTAIKLETDELLACRICLATDLKLFGIIESKLEDAFADILGTPVSSGDGLPDRVCGSCRAALWRSAELRARARAAVDVLRRLLLQQHYITTDVIRAIDRTTLRIDDKTHILTDYPTHTEYHETDYCQDSVSDHDDKSDVDLVENSMVETKDVVDNGRSIEEVKIVETEVMVENSRNEDVKKEKRKRIKNERKKVIKVKAKPEVEWVVKKKPVRKKKGFKRYFMCDEDYIKFEEKYNIQVIRLSEEEQAAEMEARRHADSYRNALMRCERCCKGFLSAFTYENHLKVHDPAVSGPNECRWCGCRFKWPNNLRTHLIETHQLKYVCKQCQRVVKGRHEALLHAEYHAGKTWECGHCARTFKKKSTFYTHVRMNHATSEPASSTCELCGETFKGPPGLKLHQIKKCNKNMKAQETAAPTIVAKKGFICEVCGKNCTSLSILAVHLRAHTGDRPHACPGCPLRFAKKDNMEKHHRVVSLSVCLSVCQSHTGDRPHACPGCPLRFAKKDNMEKHHRVSHTGDRPHACPGCPLRFAKKDNMEKHHRVSLTGDQPHACPGCPLRFPKKDNMEKHHRVSLTGDQPHACPGCPLQFAKDNMEKHHRVSVTGDQPHACPGCPLRFPKKDNMEKHHRVVSLSVCLSVTHGRPAARVPWLPAAVRQEGQHGETPPSGESVCQSLTGDQPHACPGCPLRFPKKDNMEKHHRVSHTGDRPHACPGCPLRFAKKDNMEKHHRVVHLGQRPQVACGVCGKLLAHAASLKLHVHTVHLKLPAPPRAPRPPRTRRKDNTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -