Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750814.1:8398662-8409142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00057 0.037 15.5 1.0 2 23 11 33 10 33 0.94

2 14 0.00069 0.045 15.2 0.9 1 23 39 61 39 61 0.96

3 14 9.5e-05 0.0061 18.0 1.9 1 23 67 89 67 89 0.98

4 14 0.0012 0.079 14.5 0.2 1 23 95 118 95 118 0.96

5 14 0.3 19 7.0 1.8 1 20 162 180 162 184 0.80

6 14 0.00048 0.031 15.7 1.6 1 23 219 242 219 242 0.96

7 14 0.0051 0.32 12.5 2.0 1 23 266 289 266 289 0.96

8 14 0.0022 0.14 13.7 0.4 2 23 325 347 325 347 0.93

9 14 2.5e-06 0.00016 22.9 1.6 1 23 353 375 353 375 0.98

10 14 0.33 21 6.8 6.2 1 23 410 433 410 433 0.96

11 14 0.0044 0.28 12.7 1.6 3 23 470 491 469 491 0.95

12 14 1.1e-05 0.00073 20.9 4.4 1 23 497 519 497 519 0.99

13 14 5.4e-05 0.0034 18.7 1.5 1 23 525 547 525 547 0.99

14 14 0.03 1.9 10.1 3.8 1 23 553 576 553 576 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00057	0.037	15.5	1.0	2	23	11	33	10	33	0.94
2	14	0.00069	0.045	15.2	0.9	1	23	39	61	39	61	0.96
3	14	9.5e-05	0.0061	18.0	1.9	1	23	67	89	67	89	0.98
4	14	0.0012	0.079	14.5	0.2	1	23	95	118	95	118	0.96
5	14	0.3	19	7.0	1.8	1	20	162	180	162	184	0.80
6	14	0.00048	0.031	15.7	1.6	1	23	219	242	219	242	0.96
7	14	0.0051	0.32	12.5	2.0	1	23	266	289	266	289	0.96
8	14	0.0022	0.14	13.7	0.4	2	23	325	347	325	347	0.93
9	14	2.5e-06	0.00016	22.9	1.6	1	23	353	375	353	375	0.98
10	14	0.33	21	6.8	6.2	1	23	410	433	410	433	0.96
11	14	0.0044	0.28	12.7	1.6	3	23	470	491	469	491	0.95
12	14	1.1e-05	0.00073	20.9	4.4	1	23	497	519	497	519	0.99
13	14	5.4e-05	0.0034	18.7	1.5	1	23	525	547	525	547	0.99
14	14	0.03	1.9	10.1	3.8	1	23	553	576	553	576	0.95

Sequence Information

Coding Sequence: ATGGAAGAGGTACACGGGCAGAAGCCCCTGACGTGCGGAGCGTGCGGAAAAAAGTTCCCCTTCGAGAGTCGACTTAAAAAACATCAAAGGCTTTTTCATTTGCGTGAAAAGGATTTCAAATGCGAACATTGCGACATGGCATTCGGCACTCGGCAGGGTCTCACGATCCATTCCGCTAAGCATTCCGATGTCAGGCCCTTTACATGCGAGTACTGTTCGAAAACTTTTAAAGTTCAGAAGGTTCTTGGTAAACACATGAAGTTACATTTGAATGAAGCGAGGTATATTTGCAGAATATGCGGAAATGCGTTTATAACTGATGCGAAATTGAAGTACCACATGAAGCAAGCTCATCCAAATGCTGATTGTATTGAAATTGCACCTGTCAACGTACCTATCGAGTTTGAAAATGCTATAGCTAACAGGCGCATCGGCGAGTATTTAAAATACTGCACCAAAACCGGAGAAGGAGAATCACAAGTTTACACGTGCAAAGTTTGCAATAAGAACTACAAGAAAGAGACAATACGGCAACACGTGGTACATGTGCATCTGAAGCTTAAAAAGGCATGCGCTTGTGTGATTTGCAAAGTTCCTTTGGCCGAATATTCGAGGTACAAGCACATGGAAGAGGTCCACGGGTGGAAGCCCAGACATACATGCGGAGCGTGCGGAAAAAAATTCCCTTACGAGAACCGACTTAAAAAGCATCAAAGGGTTGATCACTTGGGGAAGATCGTAAGAAGTGAATACTTAAAGTTCTGCACCATAACGGAAGAAGACGAAGAACAGACATTCACGTGCAACACCTGTGGCGGGCCGTACAAGAAATGGAGCTCCTTCTTACAACACTACCAACACATACATCTCAAGCTAAGAAAGAAAACATTCCCTTGTGTCATCTGCAAAGAACAGCTTATACCTTGGCACAGAGCGAAGCATATGGAAGAGATGCATGGCTGGAAAGCCCCAACCTGCGGAGCGTGTGGCAGAAAATTCGCTTACCCACACGAATTGGTAACACATCAAAAGGCTTACCATATGGgtgaaaaaaattacaaatgcGACAAGTGTGACATGTCCTTCGCTAGATTGGAAAGCTTGAAACGCCATTATCTTAGACATTCTAATGTTAGAGATTTTAAATGGAGATTACGGAAGGAATCGAAGGACGAAACAGACAAATTAATATGTACCGTTACTCGAGAGGAAGACGGCTCGAAAACCTTCACTTGTCTCACGTGCAGCAACACTTTCAAGCAGCGCCAGTACTTCAGACTACACTACAAGCACGTACACCTAAAACAGCGCCCGAAGACCCGCCCCTGCACTATCTGCGGGGCCCAGCTGACCCCCCACAAACACGCCAGACACTTAGAACAGGTCCACGGCAAACCGGCCCCCTCTTGCGGGGCATGCGGCAAAAAATTCTCCTTCCCCTTCGAGGTCATCCGCCACCACAAAACCTTCCACATGGGGGAGAAACACTTCCAATGCGATAAATGCTCAATGACGTTCTCACACAAGAAAAATTTAAATCTCCATATAATGAAGCATGAGGATATAAAGAAGTTTAAATGCAAATTGTGTGGGAAAGCTTTCAAGTGGAGGAATAACTTAACAGAGCATGAAAAGACACACGTGAAGATTAAGAAACATGTTTGTACTGTGTGTGAGGCCGCGTTTGTGAAGCATAGAAGTTTGCAACACCACGTCAAACTGAGACATCCGGAGGCGATATAa
Protein Sequence: MEEVHGQKPLTCGACGKKFPFESRLKKHQRLFHLREKDFKCEHCDMAFGTRQGLTIHSAKHSDVRPFTCEYCSKTFKVQKVLGKHMKLHLNEARYICRICGNAFITDAKLKYHMKQAHPNADCIEIAPVNVPIEFENAIANRRIGEYLKYCTKTGEGESQVYTCKVCNKNYKKETIRQHVVHVHLKLKKACACVICKVPLAEYSRYKHMEEVHGWKPRHTCGACGKKFPYENRLKKHQRVDHLGKIVRSEYLKFCTITEEDEEQTFTCNTCGGPYKKWSSFLQHYQHIHLKLRKKTFPCVICKEQLIPWHRAKHMEEMHGWKAPTCGACGRKFAYPHELVTHQKAYHMGEKNYKCDKCDMSFARLESLKRHYLRHSNVRDFKWRLRKESKDETDKLICTVTREEDGSKTFTCLTCSNTFKQRQYFRLHYKHVHLKQRPKTRPCTICGAQLTPHKHARHLEQVHGKPAPSCGACGKKFSFPFEVIRHHKTFHMGEKHFQCDKCSMTFSHKKNLNLHIMKHEDIKKFKCKLCGKAFKWRNNLTEHEKTHVKIKKHVCTVCEAAFVKHRSLQHHVKLRHPEAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -