Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750809.1:2715505-2722138[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0001 0.0067 17.8 2.8 1 23 213 236 213 236 0.95

2 15 0.6 38 6.0 0.4 1 23 244 267 244 267 0.95

3 15 0.00086 0.055 14.9 0.9 1 23 272 294 272 294 0.98

4 15 3 1.9e+02 3.8 8.9 1 23 300 322 300 322 0.97

5 15 2.2e-05 0.0014 19.9 3.6 1 23 328 350 328 350 0.98

6 15 0.00074 0.048 15.1 5.9 1 23 364 385 364 385 0.99

7 15 5.8e-06 0.00037 21.8 3.4 1 23 391 413 391 413 0.98

8 15 5.6e-05 0.0036 18.7 2.9 1 23 419 441 419 441 0.98

9 15 0.0026 0.16 13.5 2.0 1 23 447 469 447 469 0.99

10 15 1.7e-06 0.00011 23.5 1.0 2 23 476 497 475 497 0.97

11 15 0.0078 0.5 11.9 1.8 1 23 503 525 503 525 0.99

12 15 0.0013 0.083 14.4 7.4 1 23 531 553 531 553 0.99

13 15 7.3 4.7e+02 2.6 0.3 16 23 556 563 554 563 0.90

14 15 0.0032 0.2 13.2 10.9 1 23 569 591 569 591 0.99

15 15 3e-05 0.0019 19.5 7.7 1 23 597 619 597 619 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0001	0.0067	17.8	2.8	1	23	213	236	213	236	0.95
2	15	0.6	38	6.0	0.4	1	23	244	267	244	267	0.95
3	15	0.00086	0.055	14.9	0.9	1	23	272	294	272	294	0.98
4	15	3	1.9e+02	3.8	8.9	1	23	300	322	300	322	0.97
5	15	2.2e-05	0.0014	19.9	3.6	1	23	328	350	328	350	0.98
6	15	0.00074	0.048	15.1	5.9	1	23	364	385	364	385	0.99
7	15	5.8e-06	0.00037	21.8	3.4	1	23	391	413	391	413	0.98
8	15	5.6e-05	0.0036	18.7	2.9	1	23	419	441	419	441	0.98
9	15	0.0026	0.16	13.5	2.0	1	23	447	469	447	469	0.99
10	15	1.7e-06	0.00011	23.5	1.0	2	23	476	497	475	497	0.97
11	15	0.0078	0.5	11.9	1.8	1	23	503	525	503	525	0.99
12	15	0.0013	0.083	14.4	7.4	1	23	531	553	531	553	0.99
13	15	7.3	4.7e+02	2.6	0.3	16	23	556	563	554	563	0.90
14	15	0.0032	0.2	13.2	10.9	1	23	569	591	569	591	0.99
15	15	3e-05	0.0019	19.5	7.7	1	23	597	619	597	619	0.99

Sequence Information

Coding Sequence: ATGGACGTGACGCGCGCGTGTCGCTGCTGCCTGCGGTGTGCTCCGGACAAGGACCTGACGACGCCGTACACACATGACGGCAAAACGGAGATATATGCCGACATGATCAAAGAGAGCTTCGATATACATCTCTTGGTGGGCGGCTCGGGCTCGTGCGGCATCTGCTCGGCGTGCGTGGGCCGCCTGCGAGGCGCGAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCGGAGCTGCGGGCGTGGCTGCAGGGAGCGAGCCACGTCAAAGAGGAAGAATCTGCAGTTGAGGATCCTGATATGCAGGACGGAGATGGGACCAGTGAGCCTGTATCAGATGACATGCTCCGGTTAAACATGGCGGCCGGAGACGGGGCGAGCGACGAGGGTGAGCCGCTGTTGCATGAAGAGCTCATAATCAAGCCAGAATCGAACGAAGATGAGACAAGCGATGAGATGTCGCTGGAGGAGCGGGCAGTCAAGTCGGAGGTGTCGGACGCGGCGAGTGACGAGGACTGCGTGTCGGTGTGTTCGGAGGGTAGCGCCGCCCGCGCCAGGGAACAGCTCGCGATGGCTTGTTCCGTGGTGCTCGAGCGCTTCCGCGACGACGCGATAGTTCACAGTGGAGACAAACCATACTACTGCGAAGACTGTGGCAAGCATTTCAGAAACAAGACTATTTTAAGAAAACACATAGAAAACACACACTTGTCGACCGAATCAAAATCATTTGCTTGTGATTTGTGTAGCTCTACGTTTCAAACCGAATTCCTTGTGATAAAACACGAGAAAAGCGAACATGGTGTTTCAAATTTCATGTGTGCTGAATGTGAGTATACGACAAGTTCCAAGAAAACTTTAGAGACTCATGTAAAGAGTCATTCTTTGGATAATAATTTcaattgtagtcactgtagttaCACGAGTTCGTGTAAAAGTGATTTACATAAACACCAAACAATACACATTGCTGGAGAAGCTTTTGAGTGTAGCGACTGTGACTTCAAGTGCAGTGTTGAATCAAACCTGCGACGTCACCAGAAGACGCACAAACGGAGGCACCAGAGAATGATCACTGGAAAACAGCTTTACGAATGTAGTCATTGCGACTACAATTGCAGTAGTTCTAATTTACGAAGACACGAAAGGACACATACCAGCGAGAAGCGTTTTACGTGCAATCATTGTGATAGTAAATTCAGTCGTAAATCAAGCTTACGAGttcacctgatgatacatactggggccaAGCCATTCAAATGTAGCGATTGCGACTACAGGTGCAGGACGAAAGCAAACTTGTTAGAACACCAGACCATACACACCGGAGAGAAGCCGTACACATGCAGTCAATGCGACTACAAGAGCAGGGCTAGGTCAACCTTACGAATACACAAAATGACACATACTGAAGAGAAGCTTTTAAAATGTGGctactgtgattacaaattcaGTCAGAAATCAGACTTCcaaaaacacataattatacatactggggcaaagccatttcaatgtagcAACTGCGACTTCAAGAGCAATTGGAAAGGAAACTTACGAATTCACCAAAGGAAACACACAGGTGAGAAGCCGTACAAATGTACTCATTGTGACTACAAGTGCAGTGATAAGACAAGCTTACGTTATCACGAAATGACACATACTGGCTTACAACGTCACATAAGAATACACACAGGAGAAAAGCCGTACAAATGTAGTCATTGCGACCACAAGTGCAGAGATAGGTCAGGGTTACGACATCATGAAAGGACACATACTGGCGAGAAGCCTTTCCAGTGTAGCCTATGTGATTACAAGTGCACTCAAAGTTCACATTTAAAAAGTCATCAGAGGACACACACTGGAGAAAAGCCTTTCTAA
Protein Sequence: MDVTRACRCCLRCAPDKDLTTPYTHDGKTEIYADMIKESFDIHLLVGGSGSCGICSACVGRLRGASDFKLQVQRSQAELRAWLQGASHVKEEESAVEDPDMQDGDGTSEPVSDDMLRLNMAAGDGASDEGEPLLHEELIIKPESNEDETSDEMSLEERAVKSEVSDAASDEDCVSVCSEGSAARAREQLAMACSVVLERFRDDAIVHSGDKPYYCEDCGKHFRNKTILRKHIENTHLSTESKSFACDLCSSTFQTEFLVIKHEKSEHGVSNFMCAECEYTTSSKKTLETHVKSHSLDNNFNCSHCSYTSSCKSDLHKHQTIHIAGEAFECSDCDFKCSVESNLRRHQKTHKRRHQRMITGKQLYECSHCDYNCSSSNLRRHERTHTSEKRFTCNHCDSKFSRKSSLRVHLMIHTGAKPFKCSDCDYRCRTKANLLEHQTIHTGEKPYTCSQCDYKSRARSTLRIHKMTHTEEKLLKCGYCDYKFSQKSDFQKHIIIHTGAKPFQCSNCDFKSNWKGNLRIHQRKHTGEKPYKCTHCDYKCSDKTSLRYHEMTHTGLQRHIRIHTGEKPYKCSHCDHKCRDRSGLRHHERTHTGEKPFQCSLCDYKCTQSSHLKSHQRTHTGEKPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -