Cfag029954.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:1273732-1277095[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.7 3e+02 3.2 0.4 3 23 3 24 1 24 0.84 2 19 0.56 36 6.1 0.2 2 23 49 71 48 71 0.92 3 19 7.7 4.9e+02 2.5 1.8 3 23 95 115 94 115 0.95 4 19 1.7e-05 0.0011 20.3 1.0 1 23 119 142 119 142 0.96 5 19 0.3 19 7.0 0.4 3 21 149 167 148 168 0.94 6 19 0.42 27 6.5 1.1 3 23 177 198 175 198 0.91 7 19 0.00034 0.022 16.2 0.9 1 23 205 228 205 228 0.95 8 19 0.066 4.3 9.0 1.5 1 23 233 255 233 255 0.94 9 19 1.3e-05 0.00081 20.7 0.4 1 20 261 280 261 283 0.94 10 19 0.26 17 7.1 0.4 2 23 322 344 321 344 0.90 11 19 0.024 1.5 10.4 0.9 2 23 369 391 368 391 0.94 12 19 2.4 1.5e+02 4.1 1.2 3 23 415 435 414 435 0.96 13 19 0.00029 0.019 16.4 0.7 1 21 439 459 439 460 0.96 14 19 5.7 3.7e+02 2.9 0.2 2 21 467 486 467 487 0.90 15 19 0.0014 0.092 14.3 1.6 1 23 494 517 494 517 0.93 16 19 0.0014 0.09 14.3 1.7 1 23 524 547 524 547 0.95 17 19 3.4e-05 0.0022 19.4 0.7 2 23 553 574 552 574 0.94 18 19 2.5e-06 0.00016 22.9 0.3 1 20 580 599 580 602 0.95 19 19 1.5e-05 0.00098 20.5 5.0 1 23 608 630 608 631 0.96
Sequence Information
- Coding Sequence
- ATGGTCTGTGTGTACTGCTGTGACAGTTACGATGACCCCACTCAGTACAGAAAACACATGGCCGATGAGCATCAAACGTTCAAAGTGCGCACGGCTTTCGTTCACTGCAGCGAAGGCTATATTAAAGCCGATTGCACGGAACTTCAGTGCCGACTCTGCACACAACCCTTCGATACTTTAGAAGCTATCGCTAGTCATATTCACCTTGAACACGACAAGAAACTAAACTTGAATTCCGAACTAGGCATACAGCCTTTCAAACTCGAAAAGGATAAGCTTCTATGTGCAATGTGTAATGCTAAATTCCCTTGCATACGTCAACTAAGTCGACATACCCAATCACATTTCTTAAAATATACTTGTGATACATGTGGAAAATCTTATGCAACTATCACTACATTGAAGAACCATATTAGATTCTCTCACGCCGGTAACGAAAGGATTTGTAGGAAATGTAGAATGACATTCTCTACCTTAGAAGCCAAACGCGAACATTTGAGGTTATCTTCAAAATGTTGGTCTCACCTATGCATGTTTTGCGGCGAGCGCTTTATGACGTGGACTTTAAAACAGATCCACTTGAGTCAAGTCCACGCATCCCCTAAAAAGTCCCACCCGTGCCCTGAATGTGGTGAAGTATTCTCTGAACGGAAAAAATACCGCgtacatttcaaaatatctcACACTGATGACAACTTCATGTGCACTTGTTGTGGCTTGAAATTTGACACGAAACGTGGTTTGGAAGAGCATAGAGTAGTTCATACGAAGGAGAAGTTATTTCCTTGCACTGTGTGTTCTAAATCGTTTCCTAGAAAAAAGAACCTGGCTCAGCATATGTGGATACATAGCGAGTATAAGAGTGGTACGGTACGGTCCAACCATAGCATCGAGAGACAAAACGCCGAGATCATAGTCCAATACGCGACCGCGTTCCCCTTCCGCCTACCCGAGCAGACGTTGGTGTGCGTGTATTGCTGCGAGGATTTTGAAGACCCCTCGCTCTTCAGAACGCATATGGACGATGAACACCAACAGTTTAAAGTTGCAATGGCGTTCGCTCACATCACCGATGGGGACTTAAAGGTCGACTGCACCGATCTACAGTGCAGAACTTGCTCTGAACCGTTTAGCAAACTAGACCACGTAGCCAAACATTTGTATAGTATCCACAACTACCCATTAGACCTTAATTACCATTTAGGATTGCAACCTTTCACGCTGTTCAAGCACGAACTACTTTGCGCCGTGTGCGGAGTCAAGTACCCTTGCTTACGAACCCTAAGCAAGCACACTCAAACGCACTTTGTCAGATACACTTGCGAGACTTGCGGCAAATCCTACTCCATGACCACGTCTCTGACCGCGCATCGAAAATTCTGCAAGACCAACGGCCCGGTCTGTCGAAGATGCCGTACGGTCTTTCCAAGTTTAGAAGCCAGGAGAGAACATTACAAGTACTCGGAAAAATGCCGTCAACACATGTGTAATAAATGCGGGGAAAGATTTTATACGTGGAATTTAAAGCAGCAGCATATGTTAGATGTGCATAAGCAGGAGAAAAAACAGCATATTTGTCCAGAATGCAATGCGACGTTTTATTCACGAAGCTCTTTCTCTGTGCACTTTAAAATAACTCACACTGACAATTACATTAAATGTACCTATTGCGAACGGAGATTTGATACAGAAAGGAACTTGAAGCGGCACATTGTGGGACACACTGGAGAGAAGTCTTTCCAGTGTCCTGTTTGCTCCAAAACGTTTCCTAGGAAAAATAACTTAATACAGCACATGTGGATTCATAATGCGAATAAAAGATTCGAGTGCAAATTGTGTAACAAGAAGTTTACACAAAAGATTAGTTGGAAAACTCATATGAGGTCACACCATCCCGAGCTTTATGATAATTTGGATTTCAACCAGCCAGTGAAGAGTGTTCGTAAGGACAAATAG
- Protein Sequence
- MVCVYCCDSYDDPTQYRKHMADEHQTFKVRTAFVHCSEGYIKADCTELQCRLCTQPFDTLEAIASHIHLEHDKKLNLNSELGIQPFKLEKDKLLCAMCNAKFPCIRQLSRHTQSHFLKYTCDTCGKSYATITTLKNHIRFSHAGNERICRKCRMTFSTLEAKREHLRLSSKCWSHLCMFCGERFMTWTLKQIHLSQVHASPKKSHPCPECGEVFSERKKYRVHFKISHTDDNFMCTCCGLKFDTKRGLEEHRVVHTKEKLFPCTVCSKSFPRKKNLAQHMWIHSEYKSGTVRSNHSIERQNAEIIVQYATAFPFRLPEQTLVCVYCCEDFEDPSLFRTHMDDEHQQFKVAMAFAHITDGDLKVDCTDLQCRTCSEPFSKLDHVAKHLYSIHNYPLDLNYHLGLQPFTLFKHELLCAVCGVKYPCLRTLSKHTQTHFVRYTCETCGKSYSMTTSLTAHRKFCKTNGPVCRRCRTVFPSLEARREHYKYSEKCRQHMCNKCGERFYTWNLKQQHMLDVHKQEKKQHICPECNATFYSRSSFSVHFKITHTDNYIKCTYCERRFDTERNLKRHIVGHTGEKSFQCPVCSKTFPRKNNLIQHMWIHNANKRFECKLCNKKFTQKISWKTHMRSHHPELYDNLDFNQPVKSVRKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -