Cfag032060.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:2120981-2137250[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0036 0.23 13.0 0.1 1 23 329 351 329 351 0.97 2 13 0.092 5.9 8.6 3.9 1 23 358 380 358 380 0.96 3 13 0.017 1.1 10.8 1.7 1 23 384 406 384 406 0.97 4 13 5.9e-06 0.00038 21.7 1.9 1 23 411 434 411 434 0.98 5 13 0.026 1.6 10.3 0.1 3 23 441 462 440 462 0.95 6 13 0.026 1.6 10.3 0.1 3 23 485 506 484 506 0.95 7 13 0.0098 0.63 11.6 0.2 1 21 513 533 513 538 0.93 8 13 0.11 6.9 8.4 0.1 3 23 544 565 543 565 0.91 9 13 0.042 2.7 9.6 1.9 1 23 570 593 570 593 0.94 10 13 9.7e-05 0.0063 17.9 0.3 1 23 621 643 621 643 0.98 11 13 9.7e-06 0.00062 21.1 0.1 1 23 649 671 649 671 0.97 12 13 6.3e-06 0.00041 21.7 1.0 1 23 677 700 677 700 0.98 13 13 1.6e-05 0.001 20.4 0.3 2 23 708 730 707 731 0.95
Sequence Information
- Coding Sequence
- ATGGATATAACACATAATGCAGATGACAAGTCGTCAAATGAGGACGCTTTGTTATGCTGCCGCGCTTGCCTGTCGACCGATGGGCGATTGTACAACATGTATGAATACAAGCTTGCTGACGCGTTCGCTCACATCACAGGGACTCCTGTAGTGAAAGACAGGAGGCCACAGCACCTGTGCGCGTACTGCGGCGCGCGGCTGCTGAAATGCGCAACTTTCAGGGAAATGTGTCTGGAGGCACAGCAAACGCTCACACTGGTGTTACTTAAGGAAAAGTTGGATACACAAAATATTAGCAGAATAAAGCCTCCATCCACCCACCATCTCACAATTACCAACGTCGAAACCACAGACTATATAGACGCTCCAGCAGACGACATCAAACATGAACCTGACATAGATAATATAGACATAGTAGACATAGACGGTATCATAGGCAAGACTGACATGAAAGAAGAAGTTGAAAAAACTGACGATAAAAGACCAGTTAGGAATAGGAAAAGAAAAATTGGAACGAAGAAAAACCAAgcgattaaaattaaaaacaatgatGAACCCGAAGTCAGTCTTTCagatactaaaattaaaatggaaATCGAAATTGAGCGGCTCAATTATGATGAATATGATGGAGTAGAAACTAAGAAAGAAGATATTGaatctgatgataatgatgatattgatgatgtTGATAGTGATAACGATTTCTTAATTGCTAAGACTCCAGTGAAAAGAAAAGCAGTTAAAAAGAGAGTGGCATTAAAAAAAGAAGCAAAGAAAGATACAAAGAGAGGGGGAGAAGTGAAAAGGAAAAGGAAGGAGGGTAAAAGGAAGTTCAGGGATCCGGCCAACGACAACATGCCTATATTCGATTTTGCTAAATTTGAGAACGCACATGCAGTTAAAATTGTAGTTTTAACTAAGGAAGAGCAAATGGAAGAGATAAACCTGCGGAAGAAAACTAGGAATTTTTTGGAGTCCAATTTTCGGTGTGACGACTGCGGGAGAGGGTTTGACGCGGACGCGGCCTACAACAACCATCTGCTGCGGCACAGTCCTAGCGAGGGGCAATACCCCTGTGAGATATGTGGCATGCGCTTCAAGCTAAAATGCATGTGCCAGCGCCATCAGGACGTGCACCGACTCAAGTTCATATGCAACGAGTGCAGCTACGTGTCCAGAGACAGGTACCAAGCGAGGCGGCACCACGCTATGCACACGGGTAAGACGTACGAGTGCCAACACTGCGGGAAAGTTTTCAATAAAAGTTCGACGTATCTGTCGCACGTGCGGATGGCGCACCCCGCGCTGAACGCCGCATGCGACGTGTGCGGGGAGACGTTCGTGGGACAACTGGGACTGAAGCTGCACAAGAGCAGGGCGCATGCTGAGTGGGACGGGTGTACATCTCTCTCGGTCACACGCGTGGCGCACCCCGCGCTGAACGCCGCATGCGACGTGTGCGGGGAGACGTTCGTGGGACAACTGGGACTGAAGCTGCACAAGAGCAGGGCGCATGCTGAGAAACCGCAACAGTTTAAGTGCACGAGGTGCTCGGTAAACTTTATCAGCTTAGAAGCACTGAACAGACACACGGACACGGCCGGCGAGCACGGAGCCCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGCAGGCGCTACAGGAACATGTCATAGAGAGACATCCGAAACAAACCTATAACTGTTCAgagTGCGGCATGTCGTTCCCGAGTGCAGCGGCGTGCGAGTTGCATCACAAGCGGAAGCATTTAGGGCAGCGCTACACCGGCACCAAGATGGACCGCGCCATGCGCAAGcggTACGCTCAGAAGCCGCAGCCGAAAGGGGTGTTCGTGTGTGAGCAGTGTGGGCGAGTCGCGAAGAACGCGACCCTGCTGCGTTACCACCAGCGCAGCCATCAGGAAGTGAAGCCGTTCGCTTGCAACATCTGCCCGAAGAGCTTCCCCTTGAAAACGGCGCTAGAGGAGCATATCCGGTCGCACACGGGTGAGAAGCCTTACCAGTGTCCCGAGTGTCCGCTCGCCTTCAGCCTGAAGGGGAACTTCAACCGACACCACAAAACTgcgcACCAGGGGCTCCGCGCCAACGTCCCGTGCTCGATCTGCGGGCGCGTGTTCTCAACTAAAGCGGTGTTGCGCACGCACGTCAACACCGTGCACCACGGCCAGCCGTGGCCCAAGAGGGACCGCACCAAGCGGCCTAAGAGCGGCCACACCACGCCCAGTAGCGACATACTAGCGCTCGCTCATACTaagcaatag
- Protein Sequence
- MDITHNADDKSSNEDALLCCRACLSTDGRLYNMYEYKLADAFAHITGTPVVKDRRPQHLCAYCGARLLKCATFREMCLEAQQTLTLVLLKEKLDTQNISRIKPPSTHHLTITNVETTDYIDAPADDIKHEPDIDNIDIVDIDGIIGKTDMKEEVEKTDDKRPVRNRKRKIGTKKNQAIKIKNNDEPEVSLSDTKIKMEIEIERLNYDEYDGVETKKEDIESDDNDDIDDVDSDNDFLIAKTPVKRKAVKKRVALKKEAKKDTKRGGEVKRKRKEGKRKFRDPANDNMPIFDFAKFENAHAVKIVVLTKEEQMEEINLRKKTRNFLESNFRCDDCGRGFDADAAYNNHLLRHSPSEGQYPCEICGMRFKLKCMCQRHQDVHRLKFICNECSYVSRDRYQARRHHAMHTGKTYECQHCGKVFNKSSTYLSHVRMAHPALNAACDVCGETFVGQLGLKLHKSRAHAEWDGCTSLSVTRVAHPALNAACDVCGETFVGQLGLKLHKSRAHAEKPQQFKCTRCSVNFISLEALNRHTDTAGEHGALRPCEQCGENCASEQALQEHVIERHPKQTYNCSECGMSFPSAAACELHHKRKHLGQRYTGTKMDRAMRKRYAQKPQPKGVFVCEQCGRVAKNATLLRYHQRSHQEVKPFACNICPKSFPLKTALEEHIRSHTGEKPYQCPECPLAFSLKGNFNRHHKTAHQGLRANVPCSICGRVFSTKAVLRTHVNTVHHGQPWPKRDRTKRPKSGHTTPSSDILALAHTKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871579;
- 90% Identity
- -
- 80% Identity
- -