Cfag032142.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- Znf784
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:2901607-2916115[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0021 0.13 13.7 1.5 1 23 168 190 168 190 0.99 2 18 3.6 2.3e+02 3.6 3.2 1 23 197 220 197 220 0.93 3 18 0.017 1.1 10.9 3.8 1 23 251 274 251 274 0.98 4 18 0.00013 0.0081 17.6 0.7 2 23 283 305 283 305 0.95 5 18 0.056 3.6 9.2 0.8 2 21 314 333 313 334 0.92 6 18 0.027 1.8 10.2 0.3 3 23 347 367 346 367 0.94 7 18 0.061 3.9 9.1 0.5 1 23 372 397 372 397 0.94 8 18 0.00031 0.02 16.4 0.1 1 23 402 424 402 424 0.98 9 18 0.0082 0.53 11.9 0.2 1 23 429 454 429 454 0.96 10 18 0.061 3.9 9.1 0.5 1 23 459 484 459 484 0.94 11 18 0.061 3.9 9.1 0.5 1 23 489 514 489 514 0.94 12 18 0.0082 0.53 11.9 0.2 1 23 519 544 519 544 0.96 13 18 0.0082 0.53 11.9 0.2 1 23 549 574 549 574 0.96 14 18 1.5e-05 0.00099 20.4 0.6 1 23 579 602 579 602 0.97 15 18 0.025 1.6 10.4 3.4 2 23 629 650 628 650 0.97 16 18 0.00021 0.013 16.9 0.3 1 23 656 678 656 678 0.96 17 18 0.00081 0.052 15.0 0.6 2 23 685 706 684 706 0.97 18 18 0.00025 0.016 16.6 2.4 1 23 712 735 712 735 0.96
Sequence Information
- Coding Sequence
- ATGGACACAGTGAAACTGGAGGAACAGCAGGAGTTGTTAGCATGTCGGATTTGTCTGGCTTGGGACGTGAAATTGTATCACATTCGCGAGTCTGGCTTAGATCAAATGTTCTCAGATGTTATGGGAACTTCGCTGTCAGCGTGGGATGGGCTGCCACAGCACCTGTGCGCGTGGTGCCGCGCGCAGGTCGCGCGTGCGCAGACGCTGCGCGCGCGCAGCCGCCGCGCTGACTCGCTGCTCAAGCAGGCACTCCAGCACCAGCATATTGTAAATAAAGAAATAGAGAAGAATAGAAAAAGACCTACTAGACGAAAAAATAAAGAGCAAGAGACAGACAAAGTAGGAAAAAGAAAAGAGCGCTCAAAGCAAAAGTTTTGTTCTGAAGAAGATTTCAAAGAATTTGAGAAGAAATACGATTTCCAAGTGCAGTGTCTGACTGAAGAGGAAATGGAGAAGGAGATGGAGAAGAGAAGGGAATCTGACAAGTATCTTAAGGGAGAGTACAAGTGTGAGTTGTGTTATAAAGGGTTCCTGACGTCTGTTACGTACGAGAACCACATGAAGACTCATGATCCGGCGCGCGGCGAGCACGCGTGCCGGCTGTGTCACGTGCGTTACCAGTTCCCAGTGAAGCTGCGCCAGCATGTCCAGAATACCCACCGGCTCAAGTTCCGATGTGCGCGATGCAACGAACTAGTGCGCGGCAAGGCTTGCGCCGTGCTACACGCGGCGTACCACGCGGGCACCACGTTCCAGTGCGCGCATTGCGACAAACAGTTCCTTAAGAAGACGTCGCGCACTTCGCACATGCGCATGGCGCATCCTGTCGAGAACGCGGCCGGCGGCACCTGCGAGGTGTGTGGAGAGACCTTTACCAGCCGCACGGGACTCAAGGCACACAAGACTCGCAGCCACAAGAAGGTTAATTTGCCGGAACTAAGATGCCGGAAGTGCAGGACACAGTTCGACAACATGGACGCTCTGAAGAGGCATAAGGAAACGTACGCGAACAACAAGTGTGATTCCAGCCTgagCGCGTGCTCGCAGTGCGGGGAGAGCTGCGCGAGCGCCGACGCTCTGATCCTGCACGCGCACGAGCACGGCGTGCAACTATACACCTGCGACACTCGCTCGCAGTGCGGGGAGAGCTGCGCGAGCGCCGACGCTCTGATCCTGCACGCGCACGAGCACGGCGTGCAACTATACACCTGCGACACTTGCGGGGAGAGCTGCGCGAGCGCCGACGCTCTGATCCTGCACGCGCGCGAGCACGGCGTGCAACTATACACCTGCGACACTCGCTCGCAGTGCGGGGAGAGCTGCGCGAGCGCCGACGCTCTGATCCTGCACGCGCGCGAGCACGGCGTGCAACTATACACCTGCGACACTCGCTCGCAGTGCGGGGAGAGCTGCGCGAGCGCCGACGCTCTGATCCTGCACGCGCACGAGCACGGCGTGCAACTATACACCTGCGACACTCGCTCGCAGTGCGGGGAGAGCTGCGCGAGCGCCGACGCTCTGATCCTGCACGCGCACGAGCACGGCGTGCAACTATACACCTGCGACACTCGCTCGCAGTGCGGGGAGAGCTGCGCGAGCGCCGACGCTCTGATCTTGCACGCGCGCGAGCATGGCGTGCAACTATACACCTGCGACACTCGCTCGCAGTGCGGGGAAAGCTGCGCGAGCGCCGACGCTCTGATCTTGCACGCGCGCGAGCACGGCGTGCAACTATACACCTGCGACACTTGCACGAAATCCTTCACATCAAAGCCATCGCTCGCGACGCACATCGACCGTGTGCACCGGCTGCTGCGGCCTCCGAAGGCCGACTACAGCGACGGAGGCCGCCGCTCGCAGCCCGACTGGCTTCACTGGGCCTCCGTGTGCGAGCACTGCGGGAAGCGACTCTCCTGCCTGGCAACGCTGAAGATTCACATGAACAAGCACACAGGCGAGAGGCCGTACAAGTGCTCGCTGTGCCCCAAGGCCTACATGACGCCCTACGGACTTAACAACCACCAGGCGTTCCACACGGGGGTGAGGAAGTGGCAGTGCCCCGAGTGTCCCGCCACATTCATGCACCAGTCCTCCGTCTACCAGCACAGGAAGATACACACAGGCGAGCGCTCCCACCAGTGCACGATCTGCGAGAAATACTTCACGCAGTCCGGTTCACTCTACACGCACGTCAAATACGTGCACAAAAAGGaaacgccgccgccgcgcaAGCGCAATAAGAAACCTGTACTGTAG
- Protein Sequence
- MDTVKLEEQQELLACRICLAWDVKLYHIRESGLDQMFSDVMGTSLSAWDGLPQHLCAWCRAQVARAQTLRARSRRADSLLKQALQHQHIVNKEIEKNRKRPTRRKNKEQETDKVGKRKERSKQKFCSEEDFKEFEKKYDFQVQCLTEEEMEKEMEKRRESDKYLKGEYKCELCYKGFLTSVTYENHMKTHDPARGEHACRLCHVRYQFPVKLRQHVQNTHRLKFRCARCNELVRGKACAVLHAAYHAGTTFQCAHCDKQFLKKTSRTSHMRMAHPVENAAGGTCEVCGETFTSRTGLKAHKTRSHKKVNLPELRCRKCRTQFDNMDALKRHKETYANNKCDSSLSACSQCGESCASADALILHAHEHGVQLYTCDTRSQCGESCASADALILHAHEHGVQLYTCDTCGESCASADALILHAREHGVQLYTCDTRSQCGESCASADALILHAREHGVQLYTCDTRSQCGESCASADALILHAHEHGVQLYTCDTRSQCGESCASADALILHAHEHGVQLYTCDTRSQCGESCASADALILHAREHGVQLYTCDTRSQCGESCASADALILHAREHGVQLYTCDTCTKSFTSKPSLATHIDRVHRLLRPPKADYSDGGRRSQPDWLHWASVCEHCGKRLSCLATLKIHMNKHTGERPYKCSLCPKAYMTPYGLNNHQAFHTGVRKWQCPECPATFMHQSSVYQHRKIHTGERSHQCTICEKYFTQSGSLYTHVKYVHKKETPPPRKRNKKPVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -