Cfag030731.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:8348574-8352628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0026 0.17 13.4 0.7 1 23 90 113 90 113 0.96 2 20 2.7 1.7e+02 3.9 0.1 2 23 140 162 139 162 0.91 3 20 0.099 6.4 8.5 0.4 2 23 185 206 184 206 0.96 4 20 0.046 2.9 9.5 1.5 1 23 210 232 210 232 0.98 5 20 0.24 16 7.2 0.3 1 23 237 260 237 260 0.91 6 20 0.13 8.4 8.1 0.9 3 23 268 289 267 289 0.94 7 20 0.004 0.26 12.8 0.5 2 23 297 319 297 319 0.97 8 20 0.004 0.26 12.8 2.0 1 23 325 347 325 347 0.94 9 20 3.4e-05 0.0022 19.3 1.3 1 23 353 375 353 375 0.98 10 20 0.0029 0.19 13.3 0.3 1 17 381 397 381 398 0.95 11 20 2.2 1.4e+02 4.2 3.5 1 23 498 521 498 521 0.96 12 20 0.025 1.6 10.3 0.3 2 23 546 568 545 568 0.95 13 20 0.0013 0.083 14.4 2.1 2 23 591 612 590 612 0.97 14 20 0.94 60 5.4 0.2 1 23 616 638 616 638 0.94 15 20 0.00031 0.02 16.3 1.9 1 23 643 666 643 666 0.98 16 20 0.39 25 6.6 0.1 2 23 673 695 672 695 0.87 17 20 0.013 0.83 11.3 6.6 1 23 702 725 702 725 0.96 18 20 9.3e-05 0.006 18.0 4.7 2 23 732 753 731 753 0.97 19 20 2.3e-07 1.5e-05 26.2 0.8 1 23 759 781 759 781 0.99 20 20 0.0012 0.077 14.5 5.0 1 23 787 810 787 810 0.98
Sequence Information
- Coding Sequence
- ATGGATGTAATACTCGTACTCCTAAATAAATTGTATGTTCATTGTGAAGAGACTCATATTGGCGTCCAATTTGAGTGCTCTTCGAAAAAAGAAGATCCCAAAAACAAGAGATCTACCAGAAATCAAGGATCGGCGACAGCTCAGAATgaagaaaataaatcaaaaaagaCAAAGGGCCCAACAGAATTAGAAATGCATCGGAATAATATAAGAATTATTTTAGACAGTTCGAATGCTACTCCAATTCGGGCTCACGGCGGTATTGGCTACCAGTGCTGCTTCTGTCCGGAGCAGTACCCAAACCCCGCTGATCTCAAAACCCACACCATGCAGGGCCACGATGCTAAGACTAAGCGCGCTTTCATGAGGGGAAAGACGATGGCTGAATATTTTGTGAAGCTTGACATTACGGCGCTGCGCTGCGAATTGTGCAATAGCAATGTCGATTCACTAGAACTACTCACAAGTCATTTAATCGACAAGCACggtaaaaaaatgtacacagACATCGACAGCCACATCTTACCCTTCAAATTTGGCGACGAAACATTGCGATGCGTCTTCTGTCCCAACGATTTTAACACTTTCAAGGTTCTACAGGAGCATATGAATGTCCATTTCAGAAATTATATTTGCGAAACGTGCGATAGTGGTTTCGTTACACGCAACATGAGAAGGAACCACAAGAAAACCCACGAAACCGGATCGTTTATTTGCAGTTTTTGTCCTAAGGTTTACGACACGGCACTTAAACAAAGAGCGCATGAAAAACAAGTCCACCGGCTCCGAAAGCTAAATTTATGTGCTTATTGTAACGAGAGATTCAGAGATTTCAGACAAAAAGTAAAACATTTGAAGGATGTACACGGTATACAAAGGGAATCTCCTAAATGCAAAGCTTGTGAAAGAACATTCGAGACCATGGCAGCTCTTCGACTTCACATCAAAAGAGATCATTTAATTCAAAGACCTCATAAATGTTCTCAGTGCGATATGTCATTTTACGCGAAGGCTCAGTTGAAGAATCATTTTGTTATTCATTCTGGTACTAGGGAGTTCTCGTGCGCCGTGTGCTTTAAGTCTTTTGGTCGGAAGAAGACTTTGTCGGATCATATGAGGATCCATACCGACGATCGACGGTACAAGTGCAAACATTGCGAAATGGCTTTCGTGCAAAAGAGCAGCTTAAGAGAACGACTGCAAAGTAGCCAGAACAAAAAAGTCAACAATAAACAGACCACAAAACCAAAGGCGAAGATAAAAATAGAGGTTGAAGATATAGAACCGACCAAATCGAAGAATGTGTTTTCAAATTCAACAGAGGGCAAAGAGAAGAATTGTTCCGAACTAGTTTTAGAAATTAGGAATCAACCAGTACTATCTCGAAAGGGACACTATATGAAGAAAGAAATAAGACAACACCAGGAGAATTTATACACAATACTGCGATGTTCAGACGCAACGCTAATCCGTAGTCGCGGCAACCTCGGTTACACGTGCTACTTTTGCGCCTCGTCCTATCGTGAAGCTTGTAGCCTCAAACAACATACAAGGGACAACCACACATGCAAAGATAAACCATTCATAAAGGGCAACAATTCCAACTACTTCGTAAAGTTAGATATAACAGCTCTTCACTGTAAACTTTGTGGTGAGAGTATCGATCAACTTGAACAGTTGTCGGAACATCTTATGAAAGTACATGAAGAACCACTTCACATACTCACCAAAAGCCTAATCATTCCTTTTAAGTTCGAAACGGAAGAACTGAAATGCGCTGTTTGCAGCCAAGAATTCAATAATTTCCATTCCTTACTTGATCATATGCGAAAGCACTATAGGAATTTTATTTGCGATGTCTGTGACGAAGGCTATTTAAGCTATAACAGTATGAAAACTCACCAACTCGGGCATAATGTCGGCGAATACACATGTAAGGAATGCAACAAACTCTTCAGTAGCACCCTTAAATTGAAGAATCACACGCGAGTAGTTCATCTCGGCATTAAAAGAAACAAATGTGGCTACTGTGGCGAGAAATTCGCTGAGCTGAATTGGAAGTTGGACCACTTAGAAAAAGTTCATGGGATTAAAAAGCCAGAGTTTAAATGCACAGTGTGTAATAAGAAGTTTTCATGTTCGAAGAGTTTGAGGAACCATAAGCGAGGATTTCATCTGATGGAGAAAGATCAGACTTGCCCGGACTGTGGCATGAAATTCTTCCAAAAACACACTTTGAAGCATCACATGACAATCCACACGGGGCTACGCGCTTTTCAATGCGCGGTGTGTTCTAAGGCTTTCAGCAGGCGCTCCACTTTAAGGGAGCATATGAGGATTCACAATAACGATCGTCGTTTTAAATGCGAACACTGCAACATGGCGTTCGTACAGAAATGCAGTTGGAAGGGGCATATGCGATCGAAGCATGGGGAAGATGTCACacaataa
- Protein Sequence
- MDVILVLLNKLYVHCEETHIGVQFECSSKKEDPKNKRSTRNQGSATAQNEENKSKKTKGPTELEMHRNNIRIILDSSNATPIRAHGGIGYQCCFCPEQYPNPADLKTHTMQGHDAKTKRAFMRGKTMAEYFVKLDITALRCELCNSNVDSLELLTSHLIDKHGKKMYTDIDSHILPFKFGDETLRCVFCPNDFNTFKVLQEHMNVHFRNYICETCDSGFVTRNMRRNHKKTHETGSFICSFCPKVYDTALKQRAHEKQVHRLRKLNLCAYCNERFRDFRQKVKHLKDVHGIQRESPKCKACERTFETMAALRLHIKRDHLIQRPHKCSQCDMSFYAKAQLKNHFVIHSGTREFSCAVCFKSFGRKKTLSDHMRIHTDDRRYKCKHCEMAFVQKSSLRERLQSSQNKKVNNKQTTKPKAKIKIEVEDIEPTKSKNVFSNSTEGKEKNCSELVLEIRNQPVLSRKGHYMKKEIRQHQENLYTILRCSDATLIRSRGNLGYTCYFCASSYREACSLKQHTRDNHTCKDKPFIKGNNSNYFVKLDITALHCKLCGESIDQLEQLSEHLMKVHEEPLHILTKSLIIPFKFETEELKCAVCSQEFNNFHSLLDHMRKHYRNFICDVCDEGYLSYNSMKTHQLGHNVGEYTCKECNKLFSSTLKLKNHTRVVHLGIKRNKCGYCGEKFAELNWKLDHLEKVHGIKKPEFKCTVCNKKFSCSKSLRNHKRGFHLMEKDQTCPDCGMKFFQKHTLKHHMTIHTGLRAFQCAVCSKAFSRRSTLREHMRIHNNDRRFKCEHCNMAFVQKCSWKGHMRSKHGEDVTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -