Cfag032059.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:2091046-2111616[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 0.084 14.4 0.1 1 23 227 249 227 249 0.98 2 13 0.08 5.1 8.8 0.3 1 23 256 278 256 278 0.96 3 13 0.0056 0.36 12.4 0.5 1 23 282 304 282 304 0.97 4 13 0.00021 0.014 16.9 3.4 1 23 309 332 309 332 0.98 5 13 0.008 0.51 11.9 0.1 3 23 339 360 338 360 0.96 6 13 0.015 0.94 11.1 0.6 1 21 367 387 367 392 0.93 7 13 0.034 2.2 9.9 0.2 3 23 398 419 397 419 0.94 8 13 0.0001 0.0067 17.8 0.1 1 23 424 447 424 447 0.98 9 13 0.013 0.85 11.2 0.1 2 23 482 503 481 503 0.97 10 13 4.4e-05 0.0028 19.0 0.7 1 23 509 531 509 531 0.97 11 13 5.6e-05 0.0036 18.7 0.7 1 22 537 558 537 558 0.96 12 13 9.8e-06 0.00063 21.1 1.7 1 23 562 585 562 585 0.98 13 13 1.1e-06 6.8e-05 24.1 0.4 2 23 593 615 592 616 0.95
Sequence Information
- Coding Sequence
- ATGGATGTAACACAAATAGAGTGCTCAAATGAGGACCCCTTGTTATGCTGCCGCGCCTGCCTGTCGACCGATGCTAGACTGTTTAATATTCATGAATATAAACTTGCTGACGCCTTCACTCGTATCGTAGGAACAGCTGTTACCATGGATATGCCTCAACACCTGTGTGTATACTGCGGCACGCTGCTGCGGAAATGTGCATCTTTTCGAGACATGTGTCTACACACACAACAATGTCTTATCACGGAGCTCAATGCAAAGCTGGACCCAGGGGATATTAGCAAAATAAACTCTACCCAGGTCCTTAACCTAACTATAACAGATGTGAAAACCGTTGAATGTATTGATATCCCCCTAGTAGACAACATTAAACAGGAACCAATATGCATCGTAGACATAGATAGTGTTATAAAGAAACCCGATACAAGAACAGAAttgacTGTAGTTAAAAATCAATTAgaaatgaaaattataaaatctaaAGATATTAAAGTGAGGGAAGTAAACAGGAAGAAAGTAAAAAGAAAGATGAGGAATccggaaaataattatatgcCCGAGTTTGATTTTGCCAAATTCGAGAGTACACATGCTGTGAAAATTGTGACActgagtaaaGAAGAGCAACTGGAAGAGATCGCCGCCCGCAAGAAGTCGCAGAACTATTTGGAGTCGCGGTTTCGGTGCGAGACCTGCGGGAAGGGGTTTAACGCGGAGCCCGCGTTCAACAACCATCTAGCGAGGCACAGCCCGAGTGAGGGAGAGTTTGCTTGCGAGATCTGCGCAATACGCTACAAGAAGAAATACCGGTGGCAGGTGCATCAGGACGTGCACCGACTCAAGTTTGTGTGCAACGAGTGCAGCTACGTGTCCAGAGACAGGGGCCAAGCAAAGAGACACTACGACATGCATGCGGGCAAAACGTACAAGTGCCAACACTGCGAGAAGAGTTTCAAtaAGATGACGTCATACTTGACGCACATACGCGTCGTACATCCAGCGCAGTGCGCCGCATGCGACGTGTGCGGCGAAACGTTTGTGGGCGAGAACGGACTGAGGATGCACAAGAACCGAGCTCATTCCGAGAAATCGCAACAGTTCAAGTGTACCACTTGTTCAGCGAACTTCCATAGTTTAGAAGCTCTGAACAGACACACAGACACGGCCGGCGAGCACGGAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGCAGGCGCTACAGGAACATGTTAAAGAGACGCATCCGAAGAAAACGTATCGGTGTGAGGAGTGCGACATGGCATTCCCCGACGCGACGGCCCTGTCGGTGCACACAAAACGCAAGCACCTCAACCAGCGTCCGTCCACGGCGGCCGACCGCCTCTACAACCGGAAGGTcgctgcgcgccgccgcgccgcgctgcGCGGCGCTCCGCCCAAGGGGCAAGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGAACGCTACCCTGCTGCGGTATCACCAACGTCGACATGATGGCGTGAAGCCGTTCGCCTGCACGCAGTGCCCGAAGACTTTCTACTACAAAACGTCGTTagatgtacatatactGACACACACAGGAGAGAGACCGTTCCAGTGTCCGGAGTGTCCGCTCGCCTTCGTACTGAAGGGGCACCTCAAGCGTCACCATAAGACTGAGAGACCGTTCCAGTGTCCGGAGTGTCCGCTCGCCTTCGTACTGAAGGGGCACCTCAAGCGGCACCATAAGACTGCGCACCAAGGCATCCGCGACAACATCCCGTGCTCCATCTGTGGTCGAGTGTTCTCCACCAAGTCCGCGCTCACCACGCACGTCAACTCCGTGCACCACGGCCAGCCGTGGCCCAAGAGGGACCGGAGCAAGCGGAAATCTAAACCTAACGCTTAA
- Protein Sequence
- MDVTQIECSNEDPLLCCRACLSTDARLFNIHEYKLADAFTRIVGTAVTMDMPQHLCVYCGTLLRKCASFRDMCLHTQQCLITELNAKLDPGDISKINSTQVLNLTITDVKTVECIDIPLVDNIKQEPICIVDIDSVIKKPDTRTELTVVKNQLEMKIIKSKDIKVREVNRKKVKRKMRNPENNYMPEFDFAKFESTHAVKIVTLSKEEQLEEIAARKKSQNYLESRFRCETCGKGFNAEPAFNNHLARHSPSEGEFACEICAIRYKKKYRWQVHQDVHRLKFVCNECSYVSRDRGQAKRHYDMHAGKTYKCQHCEKSFNKMTSYLTHIRVVHPAQCAACDVCGETFVGENGLRMHKNRAHSEKSQQFKCTTCSANFHSLEALNRHTDTAGEHGDLRPCEQCGENCASEQALQEHVKETHPKKTYRCEECDMAFPDATALSVHTKRKHLNQRPSTAADRLYNRKVAARRRAALRGAPPKGQVVCEQCGQIMPNATLLRYHQRRHDGVKPFACTQCPKTFYYKTSLDVHILTHTGERPFQCPECPLAFVLKGHLKRHHKTERPFQCPECPLAFVLKGHLKRHHKTAHQGIRDNIPCSICGRVFSTKSALTTHVNSVHHGQPWPKRDRSKRKSKPNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -