Basic Information

Insect: Cydia fagiglandana
Gene Symbol: ham
Assembly: GCA_963556715.1
Location: OY750807.1:11523153-11564366[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.069 4.4 9.0 0.1 2 23 254 276 254 276 0.94

2 9 0.0031 0.2 13.2 0.6 1 23 283 306 283 306 0.93

3 9 3.4e-08 2.2e-06 28.8 0.1 1 23 312 335 312 335 0.96

4 9 2.9e-06 0.00019 22.7 1.7 1 23 341 363 341 363 0.95

5 9 8.6e-05 0.0055 18.1 7.1 1 23 369 391 369 391 0.99

6 9 0.0026 0.17 13.4 0.4 2 21 399 418 398 419 0.94

7 9 2.5e-08 1.6e-06 29.2 0.7 1 23 822 844 822 844 0.98

8 9 9e-07 5.8e-05 24.3 1.7 1 23 850 873 850 873 0.97

9 9 9.8e-06 0.00063 21.1 3.3 1 23 879 901 879 901 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.069	4.4	9.0	0.1	2	23	254	276	254	276	0.94
2	9	0.0031	0.2	13.2	0.6	1	23	283	306	283	306	0.93
3	9	3.4e-08	2.2e-06	28.8	0.1	1	23	312	335	312	335	0.96
4	9	2.9e-06	0.00019	22.7	1.7	1	23	341	363	341	363	0.95
5	9	8.6e-05	0.0055	18.1	7.1	1	23	369	391	369	391	0.99
6	9	0.0026	0.17	13.4	0.4	2	21	399	418	398	419	0.94
7	9	2.5e-08	1.6e-06	29.2	0.7	1	23	822	844	822	844	0.98
8	9	9e-07	5.8e-05	24.3	1.7	1	23	850	873	850	873	0.97
9	9	9.8e-06	0.00063	21.1	3.3	1	23	879	901	879	901	0.98

Sequence Information

Coding Sequence: ATGTCGTTTGTTTTGTCCACAGCAGGCGACAGCCAGGAATCGGGCAGCCCACCGCCGAGTCCGACTGACTCTGCGACATCCGAATCTCCGCCCACCTTAGTTCATATCAAACAGGAAACTATGCCTCCCGGCGTAGATCTTAAAGACTATTATAGCACGCTCGACTGTCGCTTATCAGACACCTATCTATCACCAAACTTCTCAGAATTTGGACGTGGATATCTACCGGGTAATTTGGAACTACCGAGGTACGACTCCAAATACTCGAGAGAAAAGGAGAAAGGTGCGAAAAATTATGATAGTGTGGACAATGAGTTGAATTTACCGATAGAACTGGTGATAAAGAATGGCGGAGTATTTGCTAGAGTTAATATTCCAAGCGGGACGAAGTACGGACCTTTCATTGGCAAGTGGACGACGGAATCAGAACCTCTGGATACAAGATATGCATGGGAGGTCCTCGGCAAGAACGGCATCCGCGGCTGGCTGGACGGCAGCTCGGAGAAGTCCAACTGGCTGAAGCTGGTCCGCTCCACCAACTACCCGCAGGACGTCAACGTCCAGCATCTACTGCTGGCTGGACAAGTTTGGTACAAGGTGACGCGGGACATCGTGTCCGGGCAGGAACTCCTCCTCGGCCCCCGGACCCCTCTGCCGCTGCAAGATGTGCAAGCAGCTGCTGGTCGACAAACGTCCAGCGTTAACTCGCCAGGCGTGTCCTTGCAAAACGAAGACGAAGAGAGAGAGGATACCGAACCACGTTGCTCCTTCTGTGACGCACCGTTCCCTAATATTGACGCTCTCGACCGTCACTTGATCCAGTCTCACGCGCAGCCGGCAGCGGCGTTCCACTGCGAGCTGTGTAACCGCGCGTACAGCTCCCGCCCGCTGCTGCTGCGGCACCGCGCGCTCGCGCACACCGACATCAGGAAATACCCCTGCGAGAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTCGGCGCGCGCAGCCACGCGTGCCCCGAGTGCGGCAAGACCTTCGCCACATCCTCAGGCCTCAAGCAGCACACGCACATACACTCCAGCGTCAAGCCCTTCCAGTGCAAGGTGTGCTTTAAGTCTTACACACAGTTTTCCAACTTGTGCAGACACAAGCGGATGCACGTCGCCTGCAGGGCCCTAGTCGAGTGCGGGAAATGTGGCAACTCCTTCAACTCTTACGCTTCTCTTACTAAACACAAGAGATTCTGTGACACTGCCAGCGCCGCCAACGTTGGAATGAGAGGGCAAATGCCGCAAGGACTGCCCCAAATGCCATCCCTCCCCAATATCGGAATGAATACGTCTGGCAACCCTAATCCTTTCCCTATGTACAGACCGACTTTACCGCTTCCATATAACACCTTTGCCCAGTATCCTGGGCTGTTCTCTGCGGCAGCCGCTGCTGCATGCCCTCCAGAGTTTTTAAACCCACTGCTCTTCAATGTTCAAGGCGCAAGACTTGCCATGGAACATGACTTTGCTCTAACAAACGCTAGTTTATTGTCGAAGCACCAAGAAGGTCGAAGCATGTCTGTCAAAAGTGTGGATAGCTCAAATTCACTTGATGATATAATGAAGAAGAATAAGGATTTGGACTATGAATCCATTAAGCGCGAAAGCGATACAGGTGATCGAACCACGCCGAATAAAGCGCATGGATTAACTGTAAAACAATCGCCTCCTTCAGTCGAGGAAGTCCCAACCCAACAACGCCCGTCACCTGTGTTGAGCATGTCAACGCCTATGAATCCATTCAATTTTGCTAGAGATGACATGAAACATCGGAAATCACCATTCAATTTTTCACTGAAGCTCAATAACAACACCATTCAAGGAAACAAGTCTCGCTCTCCGTTTCCAACAGACTTGTCTAAAAATGATACAAATGATGATGAAAAGAATTCAGAATACTCTGATTCAGAAGTAGAAGTGAAGAAGGACGACGGCGACCAGCCTCTGGATTTGTCAGTTTCCCGGAAGCAAAGCGACAAAGACTCCGAAGCCGATCTGGATGATCGTTCCTTTCGTAACTCATCTGTCAAATCATATTCTCCTCCCGAAAGTCCAATGGAGCGCGATAGCAAAACTCCCGAAAACGACACAGCAGATATCGATGTGGAGGGAGTAGAGCCCAAACGCGAAGATACGCCCCCGCAACTGGTATCGCCGCCACTAGCATTTCCGATGCCCGTGCACCCACAGCACAACAACAGCCTCATAGACGCCATGTATCGCCCCAGATTTCCGTCCTTCCATTCAGCATCCGACTCGATTCTGAATTCTTCACCCTACGTTCCGACCCCGTTTAATTTTTTATCCCCACTCCTTGGTACGGATGGCCCCGATAGGCAACAGAGCGCGTATGCAAAATTTCGTGAACTCAGCGCCGGGTCAGGGAAGCTTCGCGATCGCTACGCTTGCAAGTTTTGCGGGAAGGTATTTCCACGCAGCGCGAATCTGACGCGCCACCTTCGTACCCACACTGGGGAGCAGCCATACAAGTGTAAGTACTGCGAGCGTTCTTTCTCAATTTCATCTAACCTACAGCGACACGTGAGGAACATACACAACAAAGAGAGACCGTTCAGATGTCCACTGTGCGATAGGTGTTTCGGACAGCAAACGAATTTGGACCGGCACCTGAAGAAGCATGAAGCCGAGGGCGGAGACTCCCCGAGCTCTGCTGATACGGAACGCGAGGATGCGTACTTCGATGACATCCGATCGTTCATGGGCAAGGTGACATGCTCGCCGGGAGCGCGCTCGCCGCCTGCTTCATCCCCTCACGCGCCGCACGCGCCGCACCGCCCTTCCGTGCTCGCCATTTCCACATAG
Protein Sequence: MSFVLSTAGDSQESGSPPPSPTDSATSESPPTLVHIKQETMPPGVDLKDYYSTLDCRLSDTYLSPNFSEFGRGYLPGNLELPRYDSKYSREKEKGAKNYDSVDNELNLPIELVIKNGGVFARVNIPSGTKYGPFIGKWTTESEPLDTRYAWEVLGKNGIRGWLDGSSEKSNWLKLVRSTNYPQDVNVQHLLLAGQVWYKVTRDIVSGQELLLGPRTPLPLQDVQAAAGRQTSSVNSPGVSLQNEDEEREDTEPRCSFCDAPFPNIDALDRHLIQSHAQPAAAFHCELCNRAYSSRPLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKSYTQFSNLCRHKRMHVACRALVECGKCGNSFNSYASLTKHKRFCDTASAANVGMRGQMPQGLPQMPSLPNIGMNTSGNPNPFPMYRPTLPLPYNTFAQYPGLFSAAAAAACPPEFLNPLLFNVQGARLAMEHDFALTNASLLSKHQEGRSMSVKSVDSSNSLDDIMKKNKDLDYESIKRESDTGDRTTPNKAHGLTVKQSPPSVEEVPTQQRPSPVLSMSTPMNPFNFARDDMKHRKSPFNFSLKLNNNTIQGNKSRSPFPTDLSKNDTNDDEKNSEYSDSEVEVKKDDGDQPLDLSVSRKQSDKDSEADLDDRSFRNSSVKSYSPPESPMERDSKTPENDTADIDVEGVEPKREDTPPQLVSPPLAFPMPVHPQHNNSLIDAMYRPRFPSFHSASDSILNSSPYVPTPFNFLSPLLGTDGPDRQQSAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPPASSPHAPHAPHRPSVLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680859;
90% Identity: iTF_00657509;
80% Identity: -