Cfag030940.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:10872361-10884886[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00053 0.034 15.6 0.2 1 23 329 351 329 351 0.98 2 10 2.5e-05 0.0016 19.8 6.4 1 23 712 734 712 734 0.98 3 10 3.1e-06 0.0002 22.6 0.4 1 23 753 775 753 775 0.98 4 10 0.0015 0.096 14.2 1.3 1 23 781 803 781 803 0.98 5 10 2.1e-05 0.0014 20.0 6.2 1 23 809 831 809 831 0.98 6 10 6.7e-08 4.3e-06 27.9 2.4 1 23 837 859 837 859 0.98 7 10 0.0015 0.096 14.2 1.0 1 23 865 887 865 887 0.98 8 10 1.9e-06 0.00012 23.3 0.7 1 23 893 915 893 915 0.98 9 10 3.7e-05 0.0024 19.3 0.5 3 23 923 943 921 943 0.97 10 10 0.00012 0.0077 17.6 0.2 1 19 949 967 949 968 0.97
Sequence Information
- Coding Sequence
- ATGCTGCTGGAGGCAGCTCGGGTGATGGAGGAGGCTGAACGATTGCTACATGTTCATGTTAAGGAGGAAACAATTGAGATAGAAGACACATCAACATCAAACGGGGAGGCATGGGAGGACACCGGAGCCCTGACTGAACTGGCAACACCGCAGGATGACCCAAATGCTGATGATGAGGTCAAAGATGACCTCGAGTTGGGTCCAGTGCGGCTGGTGCGGCCCGTCGTAGCTTACGCCATTAGTGCTGCAATAGAAGAGGCGCGGGCAGTTGCAGCCGGACAGCAACCGGCTGAACAACAACCAGCTGAACAGCAACCAGCCCCCTCACAACAACCAGTTCCTTCACAACAACCAGCCCCCTCACAACAACCAGCGCCCTCACAACAACCAGCCCTCTCACAACAACCAGCGCCCTCACAACAACCAGCACCCTCGCAACAACCAGCCCCCTCGCAACAACCAGCCCCCTCGCAACAACCAGCCCCCTCGCAACTACCAGCCCCCTCGCAACAACCAGCCCCCTCACAACATCCAGCCCCCTCACAACAACCAGCCCCCTCACAACAACCAGCCCCCTCACAACAACCAACTCCCGTACTACATCCCCCTGAACAACAACCTCCTGTACCACCCGCTGAACAACAAAGTCCAGAGCGAGCCAGCAAAAAACAACTTGAACTTAGAGACAGCCCCGTCAGTCCTGAACCAATTCCTAACCCTGAAGCACCTTCCACTAGCAATGAATGTCAGGAAACCGACCATGGGGAGACTCCAACAACTGGCAAAGAAGTTAACTTAGAAAAAGAAGTAAATAGTGTCCCTGAAGCCAATGTCATTGAATACACCGTTGAAGTTAGCATAGAAAATCAAATAGAAGATGAAAAACAGTCTGATGATGAAGAAAAACTCATTTATGAAGATGATATTCTTGAAGATCCTCAAGAAAAACCCCCAGAAATGAACAGGGaagaaaaagaaaacccatataGTTGTGATATATGTAAGAAAAAGTTTGAGTTGAAGATGGATTTGATAGAACATGTTATGATACATATACACATGGAGGAAGAAGACAAATATGATGTTGACAACGTGTCAAGCACGGAAGACAAGGATTATGTGAATGAAACTAGGACAAGTATAGAAATTGAAGAAGAGAAGATTGATATTGTAGAGAATATGCAAAACACAGAGACAGAAGACAAAGGCAACGTTGTTGAAGTCTTGCCAGGCATCGAGCATGATGTTGCTATAATTATGCAAAGCTTGGAACGAGATGAGGACAAGAATGATGTTGAAATCATGCCAACGGAACAGGAAGACAAAGACGATGTTGAGACCATACCAAGTACGGAGCATAATGTTCAAATCCTGCCAAGTACGGAGCATAATGTTGAAGTCCTGCCAAGCATAGACCACGATGTTGCTGTAATAATGCAAAGTATGGAACAAGATGAGGACAAGCATGATGTTGAAATCCTGCCAAGCACGGATCATGAAGTTGAAATCCTGCCAAGCATAGACAACGATGTTGATGTTATCATGCAAAGCATGGAACAAGAGGACAAGCATGATGTCGAAATCGTGCCTAACATGGTGCATGATGTTGGAATCATGTCAAGCACAACACAGGATGACAAAGATGATGTTATCGAAATCATGCCAAGTACAGAACAGGAACAGGAAGATGTTGAAATCGTGCCAAGAACAGAACAGGAAGATCTTGAAATGGTGCCAAGTACAGATAATAAGCATGGTGTTGAAATCGTTCCGAACAAACAAGGGGATGAAGGCAATTTAATTGAAACGTTGCCAAGTAAGGAGCCGGAGGAAAAGGCTGAAATTATAGATCTTGCTGATGATCCTGAAATTATTGACCTtgtcgatgatgatgatgatgaagacgAAGAGAATAGACCAAGTGTGGAGATGGCAGTGGATAACCCAGTTGAGGAGAATGaacaaCCAAGCCTCTCTCTGCAAAAGTTCGTGCCGCGTGACTGCTTCGTAAGGCTAGACCGTTGCGACATCTCGCGCTACATAATAACAGTTCGAAAGCCCGCCAAAACCTCCAGCGCACCCGAAACTAACCCCAATGACACTGACAAACACCAACATAGTAACACAAACACATACGACTGCGACACATGCGGCAGATCATATAGGCAGAAATGTCATCTCAAGCGACATATCAAAATGCATTTGCTGACTAAATTTAAAAAGCCAAAGAAACGAAAAGAATTCAAAGAACCGCTGTACCCTTGTGTAGTATGCGACAAAAAGTTCACGCGACCATATTCGTTAAAGATGCATGAAAGAATTCACACAGGTTTGAAGCCATACTCCTGTGAATACTGTGATAAACAATTCGCAGTTTTAGGATGCTATGAAATACATAAACGGGTCCATACAGGTGTAAGACCGTACTCATGCAAGTTGTGTAAAAAAACGTTCACGCAATTCGGCCATTTGAGGACGCATCAACGAAGCCACACTGGAGAGAAGCCTTATTCCTGCGAAATATGCAAGAAGAGTTTTACGCGCTCCACTCAATTAAAAACACATATGCGGATACACACCGGTGAGAAGCCGTACTCATGTGAGACATGCCAGAGACAGTTCAAGGAACAGAGCATTTTAAAAATGCATATAAGAATACATACAGGGGAGAAGCCATACTCTTGTGATGTATGTAAAAAAGGTTTCTCACAATCAAGCGCTTTAAAAGTGCATAAACGAATACACACCGGTGAGAGGCCTTACGGTTGCGAAACATGTCAGAAGCGGTTCGCAGATTTGAGTACTTTGAAGGCACATAGGCGTATACACACAGGGGAAAAACCGTACTCCTGTAAGATGTGCAATAAGGCGTTTACTCAATTGGCTAATTTAAGGATGCATGAGTGGCGAAACTCGTGTACAAAAAAAGACGAAGCTGTTATTACGCCTTTCCCCTGA
- Protein Sequence
- MLLEAARVMEEAERLLHVHVKEETIEIEDTSTSNGEAWEDTGALTELATPQDDPNADDEVKDDLELGPVRLVRPVVAYAISAAIEEARAVAAGQQPAEQQPAEQQPAPSQQPVPSQQPAPSQQPAPSQQPALSQQPAPSQQPAPSQQPAPSQQPAPSQQPAPSQLPAPSQQPAPSQHPAPSQQPAPSQQPAPSQQPTPVLHPPEQQPPVPPAEQQSPERASKKQLELRDSPVSPEPIPNPEAPSTSNECQETDHGETPTTGKEVNLEKEVNSVPEANVIEYTVEVSIENQIEDEKQSDDEEKLIYEDDILEDPQEKPPEMNREEKENPYSCDICKKKFELKMDLIEHVMIHIHMEEEDKYDVDNVSSTEDKDYVNETRTSIEIEEEKIDIVENMQNTETEDKGNVVEVLPGIEHDVAIIMQSLERDEDKNDVEIMPTEQEDKDDVETIPSTEHNVQILPSTEHNVEVLPSIDHDVAVIMQSMEQDEDKHDVEILPSTDHEVEILPSIDNDVDVIMQSMEQEDKHDVEIVPNMVHDVGIMSSTTQDDKDDVIEIMPSTEQEQEDVEIVPRTEQEDLEMVPSTDNKHGVEIVPNKQGDEGNLIETLPSKEPEEKAEIIDLADDPEIIDLVDDDDDEDEENRPSVEMAVDNPVEENEQPSLSLQKFVPRDCFVRLDRCDISRYIITVRKPAKTSSAPETNPNDTDKHQHSNTNTYDCDTCGRSYRQKCHLKRHIKMHLLTKFKKPKKRKEFKEPLYPCVVCDKKFTRPYSLKMHERIHTGLKPYSCEYCDKQFAVLGCYEIHKRVHTGVRPYSCKLCKKTFTQFGHLRTHQRSHTGEKPYSCEICKKSFTRSTQLKTHMRIHTGEKPYSCETCQRQFKEQSILKMHIRIHTGEKPYSCDVCKKGFSQSSALKVHKRIHTGERPYGCETCQKRFADLSTLKAHRRIHTGEKPYSCKMCNKAFTQLANLRMHEWRNSCTKKDEAVITPFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -